New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 264675	50 (1.250)	7 (0.180)	4/294	NT	15.1%	intergenic (‑4/+325)	ykfA/perR	CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	CP009273	= 264741	31 (0.810)					intergenic (‑70/+259)	ykfA/perR	CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator

CACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTT  >  CP009273/264471‑265011                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                               cacaTCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACAGTAAAATCGTGAGATTCCGCCGTTAATTTCGTATGTTCAGagct                                                                                                                                                                                                                                                                            <  2:188576‑M2/275‑5 (MQ=255)  acaTCGCTGACCGGTGTTATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCTGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAAGAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  1:370987‑M2/1‑270 (MQ=255)  acaTCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  1:589681‑M2/1‑270 (MQ=255)     tCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  1:188578‑M2/1‑267 (MQ=255)                          ccGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATAGTGAGATTCCGCCGTTAATTGCGAATGTTCAGAGAGATGATATAAATCTGAAGAtttctta                                                                                                                                                                                                                                                   >  2:204055/1‑274 (MQ=255)                                   aGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGag                                                                                                                                                                                                                                                                              >  1:644734‑M2/1‑237 (MQ=255)                                                gACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgat                                                                                                                                                                                                                                                                          <  2:267770‑M2/230‑7 (MQ=255)                                                    gCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGata                                                                                                                                                                                                                                                                      <  1:267774/230‑1 (MQ=255)                                                     ctctTCCCAACACCGGGTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACNACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCAGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTAAGGAAGCTgcgc                                                                                                                                                                                                                        >  1:623233/1‑275 (MQ=255)                                                                  cGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCTCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGGAACGACTTCAAACCTTCATACTTATTCATCACTACTCCGTTGAAAAATAATAAAAAACGGTAGAATCTTGAGATTCCGCCGTTAATTGCGTAGTTTCAGAGAGATGATATATATCTGAGAATTTTTTCAGTCCTCTGCGCTTGAGTTAGCTGTTAGCCTgctcgctct                                                                                                                                                                                                           >  2:235858/1‑274 (MQ=38)                                                                       ttACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                                                                                      <  1:204057/275‑1 (MQ=255)                                                                           ccATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGANTGCTGAAACGACTTCAAACATTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                                                                                  <  1:572297/275‑1 (MQ=255)                                                                             aTAATGCCGAGTACTGGTTCTTAGTTAGGTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCGGAAACGACTTCAAACCTTCAGAATTATTCATCACGACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGAGATATATCTGAAGATTTTTTTAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                                                                                  <  1:25840/273‑1 (MQ=255)                                                                                                  tagttagtTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCag                                                                                                                                                                                                                                                                                >  2:696736/1‑174 (MQ=255)                                                                                                      tagttaACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtg                                                                                                                                                                                                                                                                            >  1:696750‑M2/1‑170 (MQ=255)                                                                                                         ttaACTGGTTAATTTGCTGCAGAAGCTGCTCTGAGACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTCATGATATATATCNGAAGA‑TTTNTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAggg                                                                                                                                                                   >  1:481992/1‑275 (MQ=255)                                                                                                             cTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCag                                                                                                                                                                                                                                                                                >  2:228881/1‑163 (MQ=255)                                                                                                                 ttAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtg                                                                                                                                                                                                                                                                            >  1:228883‑M2/1‑159 (MQ=255)                                                                                                                          tgcAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTACAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATg                                                                                                                                                   >  1:417182/1‑275 (MQ=255)                                                                                                                                                aTTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                                                                                      >  2:152080/1‑202 (MQ=255)                                                                                                                                                  tGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                                                                                               <  1:337998‑M2/127‑2 (MQ=255)                                                                                                                                                  tGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTTCGCGACTTCTGGCTCAGGCAATGAATGAGTTATAATCGCAGCATTTACTAACAGGGCTTTATTTAGAGTATGAGCCTCCGTGATACACCTTacatt                                                                                                                           >  2:304515/1‑271 (MQ=255)                                                                                                                                                    cGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                                                                                  <  1:152081/202‑1 (MQ=255)                                                                                                                                                      gCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  2:337992‑M2/1‑122 (MQ=255)                                                                                                                                                               cAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagt                                                                                                                                                                                                                                                                             <  1:192106‑M2/116‑4 (MQ=255)                                                                                                                                                                   cGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatg                                                                                                                                                                                                                                                                         >  2:192104‑M2/1‑109 (MQ=255)                                                                                                                                                                    gATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                                                                                      >  2:516699/1‑182 (MQ=255)                                                                                                                                                                        gCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                                                                                  <  1:516708/182‑1 (MQ=255)                                                                                                                                                                              aCGCCTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                                                                                      >  2:325711/1‑172 (MQ=255)                                                                                                                                                                                gACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTTAGATTCCGCCGTTCATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCACTCCTCTGCGCTTGAGGCAGCTGCGCGActgct                                                                                                                                                                                                                 >  2:667662/1‑159 (MQ=255)                                                                                                                                                                                  cTTCAAACCGTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                                                                                  <  1:325717/172‑1 (MQ=255)                                                                                                                                                                                   ttCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                                                                                               <  2:529375‑M2/94‑2 (MQ=255)                                                                                                                                                                                    ncAAACCTTCAGGATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGAGTTTTTCAATCCTCTGCGCGTGAGGCAGCTGCGCGACTGCTGGCt                                                                                                                                                                                                             <  1:667676/158‑1 (MQ=255)                                                                                                                                                                                       aaCCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCCGagtga                                                                                                                                                                                                                                                                           >  1:529384‑M2/1‑89 (MQ=255)                                                                                                                                                                                             caaaaTTAGTCATAACTACCCCTATGAACAATAATGCACACCTGGAGAATCCTGAGTTTCCGCCTTTAATTGCGTATGTTCTGAGTGATGATATATATCGGAAGATTTTTTCAAGCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGTGAGTATGAGCCGCCGTGATACACCTTACAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGc                                                                                <  2:623219/272‑1 (MQ=255)                                                                                                                                                                                             cAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTgg                                                                                                                                                                                                               >  1:679228/1‑148 (MQ=255)                                                                                                                                                                                             cAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACt                                                                                                                                                                          >  2:173736/1‑185 (MQ=255)                                                                                                                                                                                                 attattCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCa                                                                                                                                                                                                           <  2:679214/148‑1 (MQ=255)                                                                                                                                                                                                 attattCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACa                                                                                                                                                                      <  1:173738/185‑1 (MQ=255)                                                                                                                                                                                                          caCTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACt                                                                                                                                                                          >  1:388554/1‑172 (MQ=255)                                                                                                                                                                                                          caCTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTCCGTATGTACAGAGTGATGATCTATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTataata                                                                                                                                                                                      >  1:294487/1‑160 (MQ=255)                                                                                                                                                                                                            ctactCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                                                                                               <  2:587107‑M2/69‑2 (MQ=255)                                                                                                                                                                                                              actCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACa                                                                                                                                                                      <  2:388547/172‑1 (MQ=255)                                                                                                                                                                                                                tcctcTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  1:587120‑M2/1‑64 (MQ=255)                                                                                                                                                                                                                  ctctGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                                                                                               <  2:674934‑M2/63‑2 (MQ=255)                                                                                                                                                                                                                   tctGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                                                                                               <  2:15688‑M2/62‑2 (MQ=255)                                                                                                                                                                                                                      gAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  1:674948‑M2/1‑58 (MQ=255)                                                                                                                                                                                                                       aaaaaTAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                                                                                           >  1:15688‑M2/1‑57 (MQ=255)                                                                                                                                                                                                                                 aaaaaCGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaagtacgagccagtgatcggcattatgggtaaaaccggtgttgggaagagcagtctgtgcaatgccctgtttgccggagatatatcaccggtcagcgatgtggcgtcctgtaaacgtgagccact                                            <  1:645535‑M2/275‑229 (MQ=255)                                                                                                                                                                                                                                 aaaaaCGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaa                                                                                                                                        <  1:129406‑M2/183‑137 (MQ=255)                                                                                                                                                                                                                                 aaaaaCGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttc                                                                                                                                                                                                <  1:5592‑M2/127‑81 (MQ=255)                                                                                                                                                                                                                                 aaaaaCGGTAGAATCCTGAGAGTGCGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaag                                                                                                                                                                                                                                                            <  1:506096‑M2/67‑21 (MQ=255)                                                                                                                                                                                                                                     aCGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaaccg                                                                                                                                    >  2:129405‑M2/1‑43 (MQ=255)                                                                                                                                                                                                                                     aCGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaaggttt                                                                                                                                                                                                                                                        >  2:506087‑M2/1‑43 (MQ=255)                                                                                                                                                                                                                                     aCGGTAGAATCGTGAGATTACGCCGTTAATTGCGTATGTTCAGagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgca                                                                                                                                                                                            >  2:5592‑M2/1‑43 (MQ=255)                                                                                                                                                                                                                                                                     cGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTtata                                                                                                                                                                                         >  1:447520/1‑98 (MQ=255)                                                                                                                                                                                                                                                                        aTGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGActgct                                                                                                                                                                                                                 >  2:33418/1‑71 (MQ=255)                                                                                                                                                                                                                                                                        aTGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAAtc                                                                                                                          >  1:6732/1‑158 (MQ=255)                                                                                                                                                                                                                                                                        aTGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAAt     >  1:301295/1‑275 (MQ=255)                                                                                                                                                                                                                                                                         tGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATag                                                                                                                                                                                     <  2:447513/98‑1 (MQ=255)                                                                                                                                                                                                                                                                          gTTCAGAGTGATGATATATATCTGAAGATTTTTTCATTCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTGTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAAtt    <  1:396012/274‑1 (MQ=255)                                                                                                                                                                                                                                                                           ttCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGAATGCTGGCTACGGAAATGAATGAGTTATAATAGTAGCATTTACTAACAGGGATTTAGTGAGAGTATGAGACGCTGTGATACACATTACAATCTAAACCCAGCAAAGTTTCGGAGCAGCGTGCAAAAGTGAGAGACTTCACAAACTCAGGATTAGAAATAAAATAACTTTGACATCAGAACCCCGCGTAATGGGCACAAGATACACGAAattt  >  2:741738/1‑275 (MQ=255)                                                                                                                                                                                                                                                                            tCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCt                                                                                                                                                                                                             <  1:33419/71‑1 (MQ=255)                                                                                                                                                                                                                                                                            tCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCaa                                                                                                                      <  2:6732/158‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                               CACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAATGCTTAGTAATAAAGTTACTTTGAATTCAGAGCCCCGATTAATGTGAACATGATCAACGAATTTT  >  CP009273/264471‑265011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.