New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 264675	50 (1.250)	7 (0.180)	4/294	NT	15.1%	intergenic (‑4/+325)	ykfA/perR	CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator
	?	CP009273	= 264741	31 (0.810)					intergenic (‑70/+259)	ykfA/perR	CP4‑6 prophage; putative GTP‑binding protein/CP4‑6 prophage; putative DNA‑binding transcriptional regulator

GCAGGCGAAAGCGCAGTGGCTCACGTGTACAGGCCGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAA  >  CP009273/264434‑264946                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                gCAGGCGAAAGCGCAGTGGCTCACGTGTACAGGCCGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTTAAAAATAATaaaaaaaattaaa                                                                                                                                                                                                                                                  >  2:589668/1‑266 (MQ=255)               aGTGGCTCACGTTTACAGGACGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTACTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTctgaacatacgcaattaacggcggaatctcacgattctaccgttttt                                                                                                                                                                                                                                  <  1:645535‑M1/275‑48 (MQ=255)                                      cacaTCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACAGTAAAATCGTGAGATTCCGCCGTTAATTTCGTATGTTCAGagct                                                                                                                                                                                                           <  2:188576‑M2/275‑5 (MQ=255)                                       acaTCGCTGACCGGTGTTATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCTGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAAGAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                          >  1:370987‑M2/1‑270 (MQ=255)                                       acaTCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                          >  1:589681‑M2/1‑270 (MQ=255)                                          tCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                          >  1:188578‑M2/1‑267 (MQ=255)                                                               ccGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATAGTGAGATTCCGCCGTTAATTGCGAATGTTCAGAGAGATGATATAAATCTGAAGAtttctta                                                                                                                                                                                  >  2:204055/1‑274 (MQ=255)                                                                    aaaCAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTc                                                                                                                                                                                                                 >  2:644720/1‑239 (MQ=255)                                                                        aGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGag                                                                                                                                                                                                             >  1:644734‑M2/1‑237 (MQ=255)                                                                                     gACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgat                                                                                                                                                                                                         <  2:267770‑M2/230‑7 (MQ=255)                                                                                         gCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGata                                                                                                                                                                                                     <  1:267774/230‑1 (MQ=255)                                                                                          ctctTCCCAACACCGGGTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACNACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCAGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTAAGGAAGCTgcgc                                                                                                                                                       >  1:623233/1‑275 (MQ=255)                                                                                           tctTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATaaaaac                                                                                                                                                                                                                                                         >  1:611113/1‑175 (MQ=255)                                                                                               cccAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAAT‑AAAAACGGTa                                                                                                                                                                                                                                                    <  2:611100/176‑1 (MQ=255)                                                                                                       cGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCTCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGGAACGACTTCAAACCTTCATACTTATTCATCACTACTCCGTTGAAAAATAATAAAAAACGGTAGAATCTTGAGATTCCGCCGTTAATTGCGTAGTTTCAGAGAGATGATATATATCTGAGAATTTTTTCAGTCCTCTGCGCTTGAGTTAGCTGTTAGCCTgctcgctct                                                                                                                                          >  2:235858/1‑274 (MQ=38)                                                                                                       cGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTctgaacatacgcaattaacggcggaatctcacgattctaccgt                                                                                                                                                                                                                                      >  2:129405‑M1/1‑140 (MQ=255)                                                                                                           tttACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTctgaacatacgcaattaacggcggaatctcacgattctaccgttttt                                                                                                                                                                                                                                  <  1:129406‑M1/183‑48 (MQ=255)                                                                                                            ttACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                     <  1:204057/275‑1 (MQ=255)                                                                                                                ccATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGANTGCTGAAACGACTTCAAACATTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                 <  1:572297/275‑1 (MQ=255)                                                                                                                  aTAATGCCGAGTACTGGTTCTTAGTTAGGTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCGGAAACGACTTCAAACCTTCAGAATTATTCATCACGACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGAGATATATCTGAAGATTTTTTTAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                 <  1:25840/273‑1 (MQ=255)                                                                                                                   tAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAaataat                                                                                                                                                                                                                                                               >  2:325028/1‑146 (MQ=255)                                                                                                                       gCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATaaaa                                                                                                                                                                                                                                                           <  1:325034/146‑1 (MQ=255)                                                                                                                          gATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTgaga                                                                                                                                                                                                                                         >  1:336566/1‑161 (MQ=255)                                                                                                                                       tagttagtTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCag                                                                                                                                                                                                               >  2:696736/1‑174 (MQ=255)                                                                                                                                           tagttaACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtg                                                                                                                                                                                                           >  1:696750‑M2/1‑170 (MQ=255)                                                                                                                                              ttaACTGGTTAATTTGCTGCAGAAGCTGCTCTGAGACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTCATGATATATATCNGAAGA‑TTTNTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAggg                                                                                                  >  1:481992/1‑275 (MQ=255)                                                                                                                                              ttaACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAAtt                                                                                                                                                                                                                           >  1:340825/1‑155 (MQ=255)                                                                                                                                                aaCTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGt                                                                                                                                                                                                                                >  1:313626/1‑148 (MQ=255)                                                                                                                                                 aCTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTa                                                                                                                                                                                                                      >  1:402996/1‑157 (MQ=255)                                                                                                                                                  cTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGt                                                                                                                                                                                                                       <  2:340819/155‑1 (MQ=255)                                                                                                                                                  cTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCag                                                                                                                                                                                                               >  2:228881/1‑163 (MQ=255)                                                                                                                                                    ggTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAAt                                                                                                                                                                                                                            <  2:313621/148‑1 (MQ=255)                                                                                                                                                     gTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGtt                                                                                                                                                                                                                  <  2:402989/157‑1 (MQ=255)                                                                                                                                                      ttAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtg                                                                                                                                                                                                           >  1:228883‑M2/1‑159 (MQ=255)                                                                                                                                                               tgcAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTctgaacatacgcaattaacggcgtaatctcacgattctaccgt                                                                                                                                                                                                                                      >  2:5592‑M1/1‑84 (MQ=255)                                                                                                                                                               tgcAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAAtt                                                                                                                                                                                                                           >  1:458949/1‑138 (MQ=255)                                                                                                                                                               tgcAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTACAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATg                                                                                  >  1:417182/1‑275 (MQ=255)                                                                                                                                                                   gAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTctgaacatacgcaattaacggcggaatctcacgattctaccgttttt                                                                                                                                                                                                                                  <  1:5592‑M1/127‑48 (MQ=255)                                                                                                                                                                   gAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGt                                                                                                                                                                                                                       <  2:458942/138‑1 (MQ=255)                                                                                                                                                                                     aTTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                     >  2:152080/1‑202 (MQ=255)                                                                                                                                                                                       tGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                              <  1:337998‑M2/127‑2 (MQ=255)                                                                                                                                                                                       tGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTTCGCGACTTCTGGCTCAGGCAATGAATGAGTTATAATCGCAGCATTTACTAACAGGGCTTTATTTAGAGTATGAGCCTCCGTGATACACCTTacatt                                                          >  2:304515/1‑271 (MQ=255)                                                                                                                                                                                         cGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTa                                                                                                                                                                                                                      >  1:494292/1‑117 (MQ=255)                                                                                                                                                                                         cGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                 <  1:152081/202‑1 (MQ=255)                                                                                                                                                                                           gCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtga                                                                                                                                                                                                          >  2:337992‑M2/1‑122 (MQ=255)                                                                                                                                                                                             aGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGtt                                                                                                                                                                                                                  <  2:494283/117‑1 (MQ=255)                                                                                                                                                                                                    cAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagt                                                                                                                                                                                                            <  1:192106‑M2/116‑4 (MQ=255)                                                                                                                                                                                                      aGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATg                                                                                                                                                                                                                    >  1:77196/1‑106 (MQ=255)                                                                                                                                                                                                        cGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGagtgatg                                                                                                                                                                                                        >  2:192104‑M2/1‑109 (MQ=255)                                                                                                                                                                                                         gATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                     >  2:516699/1‑182 (MQ=255)                                                                                                                                                                                                          aTTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCa                                                                                                                                                                                                                <  2:77195/106‑1 (MQ=255)                                                                                                                                                                                                           ttGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATg                                                                                                                                                                                                                    >  2:651186/1‑101 (MQ=255)                                                                                                                                                                                                            tGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGt                                                                                                                                                                                                                                >  1:644962/1‑88 (MQ=255)                                                                                                                                                                                                             gCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                 <  1:516708/182‑1 (MQ=255)                                                                                                                                                                                                               tGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCa                                                                                                                                                                                                                <  1:651200/101‑1 (MQ=255)                                                                                                                                                                                                                gAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAAt                                                                                                                                                                                                                            <  2:644948/88‑1 (MQ=255)                                                                                                                                                                                                                   aCGCCTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaa                                                                                                                                     >  2:325711/1‑172 (MQ=255)                                                                                                                                                                                                                     gACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTTAGATTCCGCCGTTCATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCACTCCTCTGCGCTTGAGGCAGCTGCGCGActgct                                                                                                                                                >  2:667662/1‑159 (MQ=255)                                                                                                                                                                                                                       cTTCAAACCGTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCaatgaa                                                                                                                                 <  1:325717/172‑1 (MQ=255)                                                                                                                                                                                                                        ttCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                              <  2:529375‑M2/94‑2 (MQ=255)                                                                                                                                                                                                                         ncAAACCTTCAGGATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGAGTTTTTCAATCCTCTGCGCGTGAGGCAGCTGCGCGACTGCTGGCt                                                                                                                                            <  1:667676/158‑1 (MQ=255)                                                                                                                                                                                                                           aaaCCTTCAGAATTATTCATCACTctgaacatacgcaattaacggcggaatctcacgattctaccgt                                                                                                                                                                                                                                      >  2:506087‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                            aaCCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCCGagtga                                                                                                                                                                                                          >  1:529384‑M2/1‑89 (MQ=255)                                                                                                                                                                                                                               cTTCAGAATTATTCATCACTctgaacatacgcaattaacggcgcactctcaggattctaccgttttt                                                                                                                                                                                                                                  <  1:506096‑M1/67‑48 (MQ=255)                                                                                                                                                                                                                                  caaaaTTAGTCATAACTACCCCTATGAACAATAATGCACACCTGGAGAATCCTGAGTTTCCGCCTTTAATTGCGTATGTTCTGAGTGATGATATATATCGGAAGATTTTTTCAAGCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGTGAGTATGAGCCGCCGTGATACACCTTACAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGc               <  2:623219/272‑1 (MQ=255)                                                                                                                                                                                                                                  cAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTgg                                                                                                                                              >  1:679228/1‑148 (MQ=255)                                                                                                                                                                                                                                  cAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACt                                                                                                         >  2:173736/1‑185 (MQ=255)                                                                                                                                                                                                                                      attattCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCa                                                                                                                                          <  2:679214/148‑1 (MQ=255)                                                                                                                                                                                                                                      attattCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACa                                                                                                     <  1:173738/185‑1 (MQ=255)                                                                                                                                                                                                                                         attCATCACTACTCCTCTGAAAAATAATAAAAAACGGt                                                                                                                                                                                                                                                     >  1:132290/1‑38 (MQ=255)                                                                                                                                                                                                                                            catcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcg                                                                                                                                                                    >  2:192104‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                             atcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaaccggtgttgggaagagcagtc                                                 <  2:267770‑M1/230‑225 (MQ=255)                                                                                                                                                                                                                                             atcaCTACTCCTCTGAAAAATAATAAAAAACGGTAGaa                                                                                                                                                                                                                                                 <  2:132289/38‑1 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttcttatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaacaggtgttgggaagagcagtctgtgcaatgccctgtttgccggagatataacaccggtcagcgatgt   >  1:370987‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaaccggtgttgggaagagcagtctgtgcaatgccctgtttgccggagatatatcaccggtcagcgatgt   >  1:589681‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaaccggtgttgggaagagcagtctgtgcaatgccctgtttgccggagatatatcaccggtcagcga      >  1:188578‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgc                                                                                                                                                       >  2:337992‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagagga                                                                                                                                                                                                                 >  1:587120‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttc                                                                                                                                                                                                                       >  1:674948‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattattttt                                                                                                                                                                                                                        >  1:15688‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                              tcaCTcggaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtt                                                                                                                                                                                        >  1:529384‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                                               caCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaacta                                                                                                       >  1:696750‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                               caCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaa                                                                                                                  >  1:228883‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                               caCTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACt                                                                                                         >  1:388554/1‑172 (MQ=255)                                                                                                                                                                                                                                               caCTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTCCGTATGTACAGAGTGATGATCTATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTataata                                                                                                                     >  1:294487/1‑160 (MQ=255)                                                                                                                                                                                                                                               agctctgaacatacgaaattaacggcggaatctcacgattttactgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaaccggtgttgggaagagcagtctgtgcaatgccctgtttgccggagatatatcaccggtcagcgatgtg  <  2:188576‑M1/273‑272 (MQ=255)                                                                                                                                                                                                                                                aCTctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttg                                                                                                                                                                <  1:192106‑M1/116‑114 (MQ=255)                                                                                                                                                                                                                                                 ctctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgcaatgggtatcagagcggcttctgcagcaaattaaccagttaactaactacgagccagtgatcggcattatgggtaaaaccggtgttgggaagagcagtctgtgcaatgccct                                    >  1:644734‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                 ctactCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGa                                                                                                                                                                                                              <  2:587107‑M2/69‑2 (MQ=255)                                                                                                                                                                                                                                                  tctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaagtcgtttcagcaatcgcttgctgatctgccgca                                                                                                                                                   <  1:337998‑M1/127‑127 (MQ=255)                                                                                                                                                                                                                                                  tctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtagtgatgaataattctgaaggtttgaa                                                                                                                                                                                    <  2:529375‑M1/94‑94 (MQ=255)                                                                                                                                                                                                                                                  tctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagaggagtag                                                                                                                                                                                                             <  2:587107‑M1/69‑69 (MQ=255)                                                                                                                                                                                                                                                  tctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcagag                                                                                                                                                                                                                   <  2:674934‑M1/63‑63 (MQ=255)                                                                                                                                                                                                                                                  tctgaacatacgcaattaacggcggaatctcacgattctaccgttttttattatttttcaga                                                                                                                                                                                                                    <  2:15688‑M1/62‑62 (MQ=255)                                                                                                                                                                                                                                                  tactCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAAtt                                                                                                                                                                                                                           >  2:538650/1‑55 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                GCAGGCGAAAGCGCAGTGGCTCACGTGTACAGGCCGCCACATCGCTGACCGGTGATATATCTCCGGCAAACAGGGCATTGCACAGACTGCTCTTCCCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTACTCCTCTGAAAAATAATAAAAAACGGTAGAATCGTGAGATTCCGCCGTTAATTGCGTATGTTCAGAGTGATGATATATATCTGAAGATTTTTTCAATCCTCTGCGCTTGAGGCAGCTGCGCGACTGCTGGCTCAGGCAATGAATGAGTTATAATAGCAGCATTTACTAACAGGGATTTATTGAGAGTATGAGCCGCCGTGATACACCTTAAAATCTCAACCCAGCAAAGTTTCGGAGCCGCGAGCAAAAGTGAGAGCCTTCACAAAATAA  >  CP009273/264434‑264946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.