New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	266252 =	NA (NA)	29 (0.720)	27/310	NT	100%	intergenic (+6/‑62)	insN/insI1	pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/IS30 transposase
	?	CP009273	= 879010	0 (0.000)					intergenic (‑166/‑119)	ybjG/mdfA	undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein

CGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTC  >  CP009273/266024‑266498                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       cgAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAACTTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGAAAAATGAAATATTAAAAAAGGCAACTGTAGATTCAATTGGACAAAGCAAAAGTTATGTGAAAACATggggat                                                                                                                                                                                                          >  2:194667/1‑273 (MQ=255) cgAATCCGCTAAACTGGTCGATGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCCTTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTCGATGCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGta                                                                                                                                                                                                          >  1:139567/1‑274 (MQ=255)                                                 agccagcGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTGGAATGAGACGAACATTTCCAGAAGAGGAAACAggc                                                                                                                                                          >  2:106159/1‑273 (MQ=255)                                                               aTGTAGGACTTTCCACAATGAAGCGATGGGTGAAAAAATTACGTGATGAACGGAAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAAc                                                                                                                                             <  1:385675/274‑1 (MQ=255)                                                                                    cgcgATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGaa                                                                                                                                                                                                                     >  2:550266/1‑181 (MQ=255)                                                                                        aTGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAACTGGTCAACGCAACAGTTATGTGAAAACa                                                                                                                                                                                                                 <  1:550277/181‑1 (MQ=255)                                                                                                                                  aaaaGCCTCCCCCATCACCCCTGGACAATTTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTAt                                                                                                                                                                                                                          >  1:499563/1‑130 (MQ=255)                                                                                                                                      gCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAAAGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTGCAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCa                                                                        <  1:106160/272‑1 (MQ=255)                                                                                                                                      gCCTCCCCCATTACCCCGGAAAAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGAAACAGTTATGTGa                                                                                                                                                                                                                      <  2:499554/130‑1 (MQ=255)                                                                                                                                         tCCCCCATTACCCCGGCACACATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACAGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGCAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGACCAGGCATCAGTGAAATAGCGAATTTCCTGGGTTCACACCCCGGAACGATCTTCACTAttt                                                                  >  2:333318/1‑273 (MQ=18)                                                                                                                                           ccccATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATg                                                                   >  1:175355/1‑272 (MQ=255)                                                                                                                                            gccATTAACACGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGATACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTaa                                                               <  2:175353/274‑1 (MQ=255)                                                                                                                                            cccATTACCCCGGAAAAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTaa                                                               <  1:194669/275‑1 (MQ=255)                                                                                                                                             ccATTACCCCGGAACAAAATGAAAGCAGTGTGCTCAGGAAAAAGCTACAACGTAGTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAg                                                              <  1:333324/275‑1 (MQ=255)                                                                                                                                                        gAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGaa                                                                                                                                                                                 >  2:195463/1‑149 (MQ=255)                                                                                                                                                        gAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGCACATTTACAGCAGCGGAAAAAGCCTCTGTTTTTGAACTATGGAAGACCGGAACAGGCTTCAATGAAATAGCGAATATCCTAGGTTCAAAAACCGGAACGATCTTCACTATGTTAACAGATAcgtgca                                                   >  2:31878/1‑270 (MQ=18)                                                                                                                                                        gAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGANCTATGGAANAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCt                                                                           >  1:483437/1‑251 (MQ=255)                                                                                                                                                            aaaTTTAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCANCGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATATTCACTATGTTAACGGATACTGGCGGCAt                                               <  1:516028/275‑1 (MQ=255)                                                                                                                                                            aaaTTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACAtt                                                                                                                                                                             <  1:195465/149‑1 (MQ=255)                                                                                                                                                                             cTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAGCGCCTCTGTTTNTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGACGGCATAAAACACCATGAGCGt                               >  1:677691/1‑274 (MQ=255)                                                                                                                                                                                       aGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGaa                                                                                                                                                                                 >  1:564212/1‑118 (MQ=255)                                                                                                                                                                                       aGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTGTTTGAGCTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGATg                     >  1:651993/1‑274 (MQ=255)                                                                                                                                                                                           aCAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACAtt                                                                                                                                                                             <  2:564200/118‑1 (MQ=255)                                                                                                                                                                                            cAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGtt                                                                                                                                                    >  2:681125/1‑142 (MQ=255)                                                                                                                                                                                                gTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTg                                                                                                                                                <  1:681139/142‑1 (MQ=255)                                                                                                                                                                                                  aTTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGAGTCACTTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGCGGTTTTCTGAATGAGACGAACATTTACAGCAGAGGAAACAGCCGCTGTTTTTGTACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATACTGAGGTCAAAACCCGGAAAGATCTTCACTATGTTAAAAGATACTGACGGCAAAAACACCCATGAGAGTAATCGGGTGGTAGCTCACCTg          >  2:246269/1‑274 (MQ=14)                                                                                                                                                                                                   ttGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCa                                                                                                                                                                                                                                       >  1:204904/1‑52 (MQ=255)                                                                                                                                                                                                      aaaTGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATgag                                                                                                                                                                                      >  1:179483/1‑98 (MQ=255)                                                                                                                                                                                                       aaTGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGc                                                                                                                                                                                                                                   <  2:204902/52‑1 (MQ=255)                                                                                                                                                                                                         tGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTc  >  2:639369/1‑275 (MQ=37)                                                                                                                                                                                                          ggAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATGGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGa                                                                                                                                                                                  <  2:179481/98‑1 (MQ=255)                                                                                                                                                                                                           gAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAAt                                                                                                                                                                                         >  1:214146/1‑90 (MQ=255)                                                                                                                                                                                                           gAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTAca                                                                                                                                                                         >  1:709444/1‑106 (MQ=255)                                                                                                                                                                                                           gAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTg                     >  1:443977/1‑254 (MQ=35)                                                                                                                                                                                                           gAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGCCTTCAGTg                                                                                                                  >  1:695524/1‑161 (MQ=255)                                                                                                                                                                                                              aaTGAAATATTAAAAAAGGCTACTGTAGATTCAAt                                                                                                                                                                                                                                             >  1:161586/1‑35 (MQ=255)                                                                                                                                                                                                              aaTGAAATATTAAAAAAGGCTACTGTAGATTCAATTgg                                                                                                                                                                                                                                          >  1:272478/1‑38 (MQ=255)                                                                                                                                                                                                               aTGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATgaga                                                                                                                                                                                     <  2:214144/90‑1 (MQ=255)                                                                                                                                                                                                               aTGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTAcagcag                                                                                                                                                                     <  2:709430/106‑1 (MQ=255)                                                                                                                                                                                                               aTGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAAt                                                                                                              <  2:695510/161‑1 (MQ=37)                                                                                                                                                                                                                tGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTa                                                                     >  1:151291/1‑201 (MQ=35)                                                                                                                                                                                                                  aaaTATTAAAAAAGGCTACTGTAGATTCAATTGGt                                                                                                                                                                                                                                         <  2:161584/35‑1 (MQ=255)                                                                                                                                                                                                                  aaaTATTAAAAAAGGCTACTGTAGATTCAATTGGTCaa                                                                                                                                                                                                                                      <  2:272474/38‑1 (MQ=255)                                                                                                                                                                                                                    atatTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGtt                                                                 <  2:151290/201‑1 (MQ=32)                                                                                                                                                                                                                      atTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATga                                                                                                                                                                                       >  1:91463/1‑81 (MQ=38)                                                                                                                                                                                                                          aaaaaGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACg                                                                                                                                                                                   <  2:91462/81‑1 (MQ=38)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                       CGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTC  >  CP009273/266024‑266498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.