New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4238808 =	47 (1.170)	4 (0.100)	3/300	NT	9.4%	coding (910/1341 nt)	lamB	maltose outer membrane porin (maltoporin)
	?	CP009273	4238948 =	32 (0.820)					coding (1050/1341 nt)	lamB	maltose outer membrane porin (maltoporin)

ACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCTACAATATCAACAACAACGGTCACATGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGTGGGATGAGAAATGGGGTTACGACTACACCGGTAACGCTGATAACAACGCGAACTTCGGCAAAGCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACG  >  CP009273/4238683‑4239201                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                              aCTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCTACAATATCAACAACAACGGTCACATGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTa                                                                                                                                                                                                                                                       >  1:192717/1‑274 (MQ=255)      aTGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCTACAATATCAACAACAACGGTCACATGCTACGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACNACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGACTACGACaa                                                                                                                                                                                                                                                 >  1:563646/1‑275 (MQ=255)                               cacAGGGTTCTGGGGTTGAAATTGAGAAGGGAAAATTTGCCTCCAATTTCAACAACAACGGTCACATGTTGCGTATCCTCGACCACGGTGCGATCGCAATGGGCGAAAACTGGGACAGGATGTACGTGGGTATGTACCAGGATATCAACGGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGa                                                                                                                                                                                                                         <  2:192715/272‑1 (MQ=255)                                        atGGAGTTGCACCNNATAACCACAACNTTGCCTACAATATCAACACCAACGGTCACCGGCTGCGTTTCCGCGCACACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACCGGGATAACTACAACTGCACCAAGTTGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGATACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAAt                                                                                                                                                                                                               <  2:499661/274‑1 (MQ=255)                                                gCATTTGATAACGAAAAATTTCCCTACAATATCAACAACAACGGTCACATGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGNACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGaa                                                                                                                                                                                                                   >  1:499670/1‑263 (MQ=255)                                                                     gCCTACAATATCAACAACAACGGTCACATGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGCACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGCAAATCGGCTACGACAACGTCGAATCCCAGAGCACCGGCGACAAGAACAATCAGTACAAAATTACACACGCAcaacaaag                                                                                                                                                                                  >  1:733270/1‑273 (MQ=255)                                                                            atatCAACAACAACGGTCACATGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGNTGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTAACCTCGCACAACAATGGCa                                                                                                                                                                               >  1:626212/1‑271 (MQ=255)                                                                                              acaTGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTCTTCGCCCGATGTACAAGTGGACGAGAATCATGAGCACCGGGATGGCAATCGGCTACGACAACGTCGAAAGCGAGCGCAACGGACACACGAACCAGCAGAAAAAAATAAAACGCGCACAACAAGGGCACGACGGAGACAgacaagggta                                                                                                                                                          >  2:679609/1‑265 (MQ=255)                                                                                               caTGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGc                                                                                                                                                                                                                                                         <  1:579365/178‑1 (MQ=255)                                                                                                 tgctgcGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGCCGAATCACAGCGCACAGGAGACAAGAACAATCAGTACAAAATTACCCACGCACAACAAGGGAAGGCTGGCGAAAGCATCGGGtaaaa                                                                                                                                                       >  2:213311/1‑270 (MQ=255)                                                                                                    tgcGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGAc                                                                                                                                                                     <  1:465117/257‑1 (MQ=255)                                                                                                     gcGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAAc                                                                                                                                                                                                                                                >  2:34488/1‑181 (MQ=255)                                                                                                      cGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACGACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTAcc                                                                                                                                                                                                >  1:377644/1‑228 (MQ=255)                                                                                                      cGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCAGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATACCAGCGAACCGGCGACAAGAACAATCAGTACAAAATTAACCTCGCACAACAATGGCAGGCTGGCGACAGAAACTGGTAACGCCCgg                                                                                                                                                  >  1:26767/1‑274 (MQ=255)                                                                                                         aTCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCg                                                                                                                                                                                                                                            <  1:34489/181‑1 (MQ=255)                                                                                                                                  TGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATNCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAg                                                                                                                     >  1:568623‑M1/1‑275 (MQ=255)                                                                                                                                     gCGACAACTGGGACATGAAGTACGAGGGTATGTAACAGGATAACAACGGGGATAACGACAACGGCACCAAGTGGTGGACCGGCGGTATTCGCCCGAGGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACACCGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGc                                                                                                                                                      <  1:256248/239‑1 (MQ=255)                                                                                                                                               ggACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCgg                                                                                                                                                                                                                                                          >  2:737553/1‑129 (MQ=255)                                                                                                                                               ggACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGAAAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCATGTCTTCGCAACCTACGCCAAGCGGGAGGAGAAAt                                                                                                        >  1:206481/1‑275 (MQ=255)                                                                                                                                                  tggcgtccacttgtacatcgggcgaataccgacggtccaccacttggtgccgttgtcgttatcccagttgatatcctggtacatacccacgtacatcatgtcccagttgtcgcccatggaAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGAc                                                                                                                                                                                                                        >  1:466546‑M2/121‑160 (MQ=255)                                                                                                                                                  tggcgtccacttgtacatcgggcgaataccgacggtccaccacttggtgccgttgtcgttatcccagttgatatcctggtacatacccacgtacatcatgtcccagttgtcgcccatggaAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAg                                                                                                                                                                              >  2:655567‑M2/121‑202 (MQ=255)                                                                                                                                                   atgatgTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGGAATCGGCTAc                                                                                                                                                                                                                                                      <  1:737567/129‑1 (MQ=255)                                                                                                                                                      gtccacttgtacatcgggcgaataccgacggtccaccacttggtgccgttgtcgttatcccagttgatatcctggtacatacccacgtacatcatgtcccagttgtcgcccatggaAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGa                                                                                                                                                                                                                    <  2:466539‑M2/44‑1 (MQ=255)                                                                                                                                                      gtccacttgtacatcgggcgaataccgacggtccaccacttggtgccgtagtcgttatcccagttgatatcctggtacatacccacgtacatcatgtcccagttgtcgcccatggaAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTg                                                                                                                                                                          <  1:655581‑M2/86‑1 (MQ=255)                                                                                                                                                      atgTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGAGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACATACGCCAAGTGGGATGAGAAAAGGGGTTa                                                                                                 >  1:457009/1‑275 (MQ=255)                                                                                                                                                            gTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGTAACAAGAACAANCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGTg                                                                                                                   >  1:671184/1‑251 (MQ=255)                                                                                                                                                                     ttccAGGAGATCAAATGGGACAACGACAACGCCACCAAGTGGTGGACCTACGGGATGAGCCCGAGGTACAAGTTGACGCCAATCATGAGCTCCGTGACGGAAATCGGCTACGACAGCGACGAATCCCATCGCCCAGACCACAAGAACAAGCAGTACAAAATTACCCTCGCACACCAATGGCAGGCTGTCGACAGCATCGGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGGCAAGCTGGATGAGAAATGGGGTTACGACTAAACCGGTa                                                                                   <  2:206479/272‑1 (MQ=255)                                                                                                                                                                     tACCAGGATATCCCCTTGGATAACGACAACGGCACCCAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGTGGGATGAGAAATGGGGTTACGACTACACCGGTa                                                                                   <  1:213313/274‑1 (MQ=255)                                                                                                                                                                     tACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCACACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGTGGGATGAGAAATGGGGTTACGACTACACCGGTa                                                                                   <  1:74737/274‑1 (MQ=255)                                                                                                                                                                               tCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAACTACACTCGCACAACGATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGAGGGATGAGAAATGGGGTTACGACTACACCGGAAACGCTGATaa                                                                         >  1:595041/1‑274 (MQ=255)                                                                                                                                                                                                                      tCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTgg                                                                                                                                                                         >  1:31414/1‑139 (MQ=255)                                                                                                                                                                                                                          tATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGAc                                                                                                                                                                     <  2:31413/139‑1 (MQ=255)                                                                                                                                                                                                                                cccGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATc                                                                                                                                                                                                              >  2:557519/1‑92 (MQ=255)                                                                                                                                                                                                                                    aTGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTa                                                                                                                                                                                                          <  1:557531/92‑1 (MQ=255)                                                                                                                                                                                                                                               gACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAgcgc                                                                                                                                                                                                                                 >  2:220961/1‑58 (MQ=255)                                                                                                                                                                                                                                                   ccAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCg                                                                                                                                                                                                                             <  1:220963/58‑1 (MQ=255)                                                                                                                                                                                                                                                      aTCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGTGGGATGAGAAATGGGGTTACGACTACACCGGTAACGCTGATAACAACGCGAACTTCGGCAAAGCCGTTCCTGCTGATTTCAAAGACGGCAACTTCAGTCGTGGCAACAGcgacg  >  1:349684/1‑274 (MQ=255)                                                                                                                                                                                                                                                                   tGATGGAAATCGGCTACGACATCGTCGAATCCCAGCGCACCGGCGACAAGAAAAATCAGTACAAAATCACACTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCACGGCTATTCGTGTCTTCGCAACCTACGCCAAGTGGGATGAGAAATg                                                                                                       >  1:247875/1‑160 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                              ACTCGATGACCTCGCAGGGTAAAGGGCTGTCGCAGGGTTCTGGCGTTGCATTTGATAACGAAAAATTTGCCTACAATATCAACAACAACGGTCACATGCTGCGTATCCTCGACCACGGTGCGATCTCCATGGGCGACAACTGGGACATGATGTACGTGGGTATGTACCAGGATATCAACTGGGATAACGACAACGGCACCAAGTGGTGGACCGTCGGTATTCGCCCGATGTACAAGTGGACGCCAATCATGAGCACCGTGATGGAAATCGGCTACGACAACGTCGAATCCCAGCGCACCGGCGACAAGAACAATCAGTACAAAATTACCCTCGCACAACAATGGCAGGCTGGCGACAGCATCTGGTCACGCCCGGCTATTCGTGTCTTCGCAACCTACGCCAAGTGGGATGAGAAATGGGGTTACGACTACACCGGTAACGCTGATAACAACGCGAACTTCGGCAAAGCCGTTCCTGCTGATTTCAACGGCGGCAGCTTCGGTCGTGGCGACAGCGACG  >  CP009273/4238683‑4239201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.