| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 354080 | 354088 | 9 | 38 [0] | [0] 40 | cynR | transcriptional activator of cyn operon; autorepressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 354079 | 0 (0.000) | 37 (0.670) | 22/134 | 0.7 | 100% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
| ? | CP009273 | 354089 = | 0 (0.000) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor | |||||
CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/354014‑354079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCAT > CP009273/354089‑354154 CCTGCGTGATTTCCTGTAGCTGGAGGGTGATGCTGGGATAGCGCGCATAGAACTCCGCCATTAAGGAG > 1:1764107/1‑68CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAG > 1:438070/1‑68CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCAGCCATTAAGGAG > 1:4096864/1‑68 GCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAG < 1:2934847/68‑1 GCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAG < 1:2201544/68‑1 ACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTC < 1:1757383/68‑1 ATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGT < 1:3778441/68‑1 TTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAA > 1:1690439/1‑68 CTGTAGCTGGAGCGTGATGCTGGGTTAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGG < 1:4686891/68‑1 AGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGG > 1:1644240/1‑68 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG > 1:26014/1‑68 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG > 1:2088408/1‑68 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG > 1:4085115/1‑68 GAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGAAGCTCGTAAAGGTGGGGGTGA > 1:1093409/1‑68 GTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGC < 1:3293276/68‑1 TGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATA > 1:2257786/1‑68 GATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGTGATACGCAGC > 1:2465347/1‑68 ATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCG > 1:1154678/1‑68 ATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCG > 1:328638/1‑68 TAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATCCGCAGCGA > 1:450531/1‑68 TAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGA > 1:3720763/1‑68 CGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCC > 1:3843870/1‑68 AGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTC > 1:1738893/1‑68 CCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCG > 1:31262/1‑68 CCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCG < 1:320516/68‑1 CCGCCATTAAGGAGTAGCGCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCG < 1:314249/68‑1 GCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGC > 1:1119943/1‑68 agATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCA < 1:2817488/66‑1 TTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACA < 1:3898301/68‑1 TTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACA < 1:2551434/68‑1 TAAGGAGTTGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT < 1:1184669/68‑1 TAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT < 1:27279/68‑1 TAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT < 1:4351097/68‑1 TAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCCGCAACAT < 1:2022799/68‑1 GGAGTAGCTCGTAAAGGTGTGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGTTCGGCAACATCAT > 1:2008217/1‑68 GGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCAT > 1:2929631/1‑68 GGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCAT > 1:253511/1‑68 CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/354014‑354079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCAT > CP009273/354089‑354154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |