Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 354080 | 354088 | 9 | 38 [0] | [0] 40 | cynR | transcriptional activator of cyn operon; autorepressor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 354079 | 0 (0.000) | 37 (0.670) | 22/134 | 0.7 | 100% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
? | CP009273 | 354089 = | 0 (0.000) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
CTCCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGG > CP009273/354012‑354145 | ctcCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAgg < 1:4001249/68‑1 (MQ=255) ccTGCGTGATTTCCTGTAGCTGGAGGGTGATGCTGGGATAGCGCGCATAGAACTCCGCCATTAAGGag > 1:1764107‑M1/1‑66 (MQ=255) ccTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGag > 1:438070‑M1/1‑66 (MQ=255) ccTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCAGCCATTAAGGag > 1:4096864‑M1/1‑66 (MQ=255) gCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtag < 1:2934847‑M1/68‑6 (MQ=255) gCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtag < 1:2201544‑M1/68‑6 (MQ=255) aCATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctc < 1:1757383‑M1/68‑9 (MQ=255) aTTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgt < 1:3778441‑M1/68‑11 (MQ=255) ttCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaa > 1:1690439‑M1/1‑56 (MQ=255) cTGTAGCTGGAGCGTGATGCTGGGTTAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaagg < 1:4686891‑M1/68‑16 (MQ=255) aGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtggg > 1:1644240‑M1/1‑49 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg > 1:26014‑M1/1‑48 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg > 1:4085115‑M1/1‑48 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg > 1:2088408‑M1/1‑48 (MQ=255) gAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagaagctcgtaaaggtgggggtga > 1:1093409‑M1/1‑44 (MQ=255) gTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggc < 1:3293276‑M1/68‑29 (MQ=255) tGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgata > 1:2257786‑M1/1‑36 (MQ=255) gATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggtgatacgcagc > 1:2465347‑M1/1‑30 (MQ=255) aTAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcg > 1:328638‑M1/1‑29 (MQ=255) aTAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcg > 1:1154678‑M1/1‑29 (MQ=255) tAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatccgcagcga > 1:450531‑M1/1‑28 (MQ=255) tAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcga > 1:3720763‑M1/1‑28 (MQ=255) cgcgcATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcc > 1:3843870‑M1/1‑25 (MQ=255) aGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtc > 1:1738893‑M1/1‑18 (MQ=255) ccGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcg > 1:31262‑M1/1‑12 (MQ=255) ccGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcg < 1:320516‑M1/68‑57 (MQ=255) ccGCCATTAAGGagtagcgcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcg < 1:314249‑M1/68‑57 (MQ=255) gCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggc > 1:1119943‑M1/1‑10 (MQ=255) agattAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggca < 1:2817488‑M1/66‑60 (MQ=255) ttAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaaca < 1:3898301‑M1/68‑63 (MQ=255) ttAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaaca < 1:2551434‑M1/68‑63 (MQ=255) tAAGGagttgctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacat < 1:1184669‑M1/68‑64 (MQ=255) tAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacat < 1:27279‑M1/68‑64 (MQ=255) tAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacat < 1:4351097‑M1/68‑64 (MQ=255) tAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatccgcaacat < 1:2022799‑M1/68‑64 (MQ=255) ggagtagctcgtaaaggtgtgggtgacggcgatacgcagcgatcctcgcgtcagttcggcaacatcat > 1:2008217‑M1/1‑2 (MQ=255) ggagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacatcat > 1:2929631‑M1/1‑2 (MQ=255) ggagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacatcat > 1:253511‑M1/1‑2 (MQ=255) | CTCCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGG > CP009273/354012‑354145 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |