| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 354080 | 354088 | 9 | 38 [0] | [0] 40 | cynR | transcriptional activator of cyn operon; autorepressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 354079 | 0 (0.000) | 37 (0.670) | 22/134 | 0.7 | 100% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
| ? | CP009273 | 354089 = | 0 (0.000) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor | |||||
TTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGA > CP009273/354023‑354156 | cctgcgtgatttcctgtagctggagggtgatgctgggatagcgcgcatagaactccgccattaaggAg > 1:1764107‑M2/67‑68 (MQ=255)cctgcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAg > 1:438070‑M2/67‑68 (MQ=255)cctgcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatcagccattaaggAg > 1:4096864‑M2/67‑68 (MQ=255) gcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAg < 1:2934847‑M2/5‑1 (MQ=255) gcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAg < 1:2201544‑M2/5‑1 (MQ=255) acatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTc < 1:1757383‑M2/8‑1 (MQ=255) atttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGt < 1:3778441‑M2/10‑1 (MQ=255) ttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTaa > 1:1690439‑M2/57‑68 (MQ=255) ctgtagctggagcgtgatgctgggttagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAgg < 1:4686891‑M2/15‑1 (MQ=255) agctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTggg > 1:1644240‑M2/50‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:26014‑M2/49‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:2088408‑M2/49‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:4085115‑M2/49‑68 (MQ=255) gagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGAAGCTCGTAAAGGTGGGGGTGa > 1:1093409‑M2/45‑68 (MQ=255) gtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGc < 1:3293276‑M2/28‑1 (MQ=255) tgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATa > 1:2257786‑M2/37‑68 (MQ=255) gatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGTGATACGCAGc > 1:2465347‑M2/31‑68 (MQ=255) atagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCg > 1:1154678‑M2/30‑68 (MQ=255) atagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCg > 1:328638‑M2/30‑68 (MQ=255) tagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATCCGCAGCGa > 1:450531‑M2/29‑68 (MQ=255) tagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGa > 1:3720763‑M2/29‑68 (MQ=255) cgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATcc > 1:3843870‑M2/26‑68 (MQ=255) agaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTc > 1:1738893‑M2/19‑68 (MQ=255) ccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCg > 1:31262‑M2/13‑68 (MQ=255) ccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCg < 1:320516‑M2/56‑1 (MQ=255) ccgccattaaggAGTAGCGCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCg < 1:314249‑M2/56‑1 (MQ=255) gccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGc > 1:1119943‑M2/11‑68 (MQ=255) agattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCa < 1:2817488‑M2/59‑1 (MQ=255) ttaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAca < 1:2551434‑M2/62‑1 (MQ=255) ttaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAca < 1:3898301‑M2/62‑1 (MQ=255) taaggAGTTGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:1184669‑M2/63‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:27279‑M2/63‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:4351097‑M2/63‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCCGCAAcat < 1:2022799‑M2/63‑1 (MQ=255) ggAGTAGCTCGTAAAGGTGTGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGTTCGGCAAcatcat > 1:2008217‑M2/3‑68 (MQ=255) ggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcatcat > 1:2929631‑M2/3‑68 (MQ=255) ggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcatcat > 1:253511‑M2/3‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:2426202/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:4680539/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:885395/1‑68 (MQ=255) | TTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGA > CP009273/354023‑354156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |