New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3577555	NA (NA)	54 (0.980)	32/134	0.2	100%	intergenic (+15/‑1)	insB1/yrhA	IS1 transposase B/pseudogene, interrupted by IS1E
	?	CP009273	4232204 =	0 (0.000)					intergenic (‑22/+350)	xylE/malG	D‑xylose transporter/maltose transporter subunit

TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3577491‑3577555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA  >  CP009273/4232204‑4232270                                                                                                                                      TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTG                                                                  >  1:38969/1‑68    ATGACTAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC                                                               <  1:35629/68‑1    ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTTTCAATAAGTTGGAGTCATTACCCTGATC                                                               <  1:947402/68‑1    ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTTTCAATAAGTTGGAGTCATTACCCTGATC                                                               <  1:2021404/68‑1    ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC                                                               <  1:4167676/68‑1    ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC                                                               <  1:1869418/68‑1    ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC                                                               <  1:1680839/68‑1    ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTCGGAGTCATTACCCTGATC                                                               <  1:3417333/68‑1      GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTT                                                             <  1:1366442/68‑1       ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTT                                                            >  1:3381271/1‑68         AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTA                                                          >  1:3449284/1‑68         AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTA                                                          >  1:2977822/1‑68            GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCA                                                       >  1:889832/1‑68              CATCTGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT                                                     <  1:1450428/68‑1              CATCGGGCATTATCTTAACATAAAACAATTTCAATAAGTTGGTGTCATTACCCTGATCTTTTATCTGT                                                     <  1:4700067/68‑1              CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT                                                     <  1:2199223/68‑1              CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT                                                     <  1:4648304/68‑1              CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT                                                     <  1:3813305/68‑1                TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGC                                                   <  1:1180935/68‑1                   GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATT                                                >  1:3385675/1‑68                   GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATT                                                <  1:226568/68‑1                     CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGA                                              <  1:4179738/68‑1                      ATTATCTCAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTATTATCAGTGCATTGAT                                             <  1:2539164/68‑1                      ATTAACTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGtt                                             <  1:4482885/68‑3                       TTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATG                                            <  1:1570998/68‑1                         ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTT                                          >  1:154352/1‑68                          TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG                                         >  1:1289354/1‑68                           CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGG                                        <  1:1500700/68‑1                                 ATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGT                                  <  1:601027/68‑1                                      ACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGC                             >  1:3550001/1‑68                                       CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA                            >  1:3620474/1‑68                                       CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA                            <  1:4314351/68‑1                                       CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA                            >  1:1897862/1‑68                                       CACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCA                            >  1:1784184/1‑68                                        ACTATCAATAAGTTGGAGTCATTACCATGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG                           >  1:2697737/1‑68                                         CTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGT                          <  1:1357973/68‑1                                          TATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTT                         <  1:1751632/68‑1                                           ATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTA                        >  1:123235/1‑68                                             CAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAG                      >  1:1319417/1‑68                                               ATAAGTTGGAGTCATTACCCTGAGCTTTTATCAGTTCATTGATGTTGGAATTGTCAGGCAGTTAAGGC                    <  1:1385129/68‑1                                                TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCA                   >  1:1091145/1‑68                                                TAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCA                   <  1:1020699/68‑1                                                  AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT                 >  1:1896859/1‑68                                                  AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT                 >  1:4311506/1‑68                                                        AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT           <  1:155775/68‑1                                                        AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT           <  1:4570848/68‑1                                                        AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT           <  1:2973875/68‑1                                                         GTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCCGGCAGTTAAGGCAATTATCATT          >  1:3867170/1‑68                                                         GTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATT          >  1:2507477/1‑68                                                         GTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAAATGTCAGGCAGTTATGGCAATTATCATT          >  1:3491397/1‑68                                                                 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA  >  1:1466983/1‑68                                                                 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA  >  1:3922657/1‑68                                                                 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA  >  1:2781866/1‑68                                                                 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA  >  1:1151347/1‑68                                                                                                                                      TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3577491‑3577555 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA  >  CP009273/4232204‑4232270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.