| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3577555 | NA (NA) | 54 (0.980) | 32/134 | 0.2 | 100% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
| ? | CP009273 | 4232204 = | 0 (0.000) | intergenic (‑22/+350) | xylE/malG | D‑xylose transporter/maltose transporter subunit | |||||
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTT > CP009273/3577494‑3577621 | aTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAtt > 1:2603426/1‑68 (MQ=33) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaa > 1:2750071/1‑68 (MQ=39) cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTaaaa < 1:1409270/68‑1 (MQ=40) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAg > 1:4241144/1‑68 (MQ=255) gTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTTCCGACATTAAAAGTaa > 1:710805/1‑68 (MQ=255) gTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTaa > 1:3231462/1‑68 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAAc > 1:325693/1‑68 (MQ=255) cATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACt > 1:3512705/1‑68 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACtttttt > 1:1751082/1‑68 (MQ=255) aTTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGaa < 1:997057/68‑1 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGATATTa > 1:821284/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa > 1:2685898/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa > 1:3413166/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa > 1:3165320/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa > 1:2001835/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTa > 1:616486/1‑68 (MQ=255) cTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTag < 1:1443878/68‑1 (MQ=255) gAACATAAAGCACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:791894/68‑1 (MQ=255) gAACATAAAACACTATCAATATGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:2581743/68‑1 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:2133576/68‑1 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:2873897/68‑1 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:1917505/68‑1 (MQ=255) gAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:4566825/68‑1 (MQ=255) gAACATAAAACACTATCAAAAACTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTagag < 1:1701456/68‑1 (MQ=255) aaCATAATACACTAACAATAAGTTGGAGTCATAACCGACATTAAAAGTAACTTTTTTGAAATTAgaga < 1:1411808/68‑1 (MQ=25) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAgaga > 1:1441947/1‑68 (MQ=255) aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGat > 1:31108/1‑68 (MQ=255) aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGat > 1:2837682/1‑68 (MQ=255) cATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGata > 1:1325213/1‑68 (MQ=255) tAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGataat < 1:1479818/68‑1 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTg > 1:1882639/1‑68 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTg > 1:4629421/1‑68 (MQ=255) acacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTg > 1:332514/1‑68 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg > 1:1316834/1‑68 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg > 1:3179394/1‑68 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTgg > 1:3556185/1‑68 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAAAATTgg > 1:3550545/1‑68 (MQ=255) acTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGc > 1:3171268/1‑68 (MQ=255) tCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAg < 1:122073/68‑1 (MQ=255) tCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAg < 1:899107/68‑1 (MQ=255) tCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAg < 1:2284693/68‑1 (MQ=255) cAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGa < 1:2823851/68‑1 (MQ=255) cAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGa < 1:1733216/68‑1 (MQ=255) cAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTATTGAAATTAGAGATAATATTGGCACAGa < 1:710481/68‑1 (MQ=255) aaTAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaa > 1:1788198/1‑68 (MQ=255) aaTAAGTTCGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaa < 1:1406180/68‑1 (MQ=255) tAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATATTATTGGCACAGaaaa > 1:2804330/1‑68 (MQ=255) tAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa > 1:862693/1‑68 (MQ=255) tAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa < 1:806401/68‑1 (MQ=255) tAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa > 1:4051497/1‑68 (MQ=255) aaaGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGaaaa < 1:197963/67‑1 (MQ=255) aGTTGGAGTCATTAGCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:2352401/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAATGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGTAAata > 1:1736562/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAATGTAACTTTTTTGAAATTAGAGATAATATTGGAACAGAAAtta > 1:757959/1‑68 (MQ=38) aGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:4343366/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:2922688/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:4211009/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:1310694/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:3761351/1‑68 (MQ=255) aGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAata > 1:37523/1‑68 (MQ=255) ttGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAatata < 1:4375060/68‑1 (MQ=255) ttGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAatata > 1:685866/1‑68 (MQ=255) ggAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATAtt > 1:3942084/1‑68 (MQ=255) aGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCa > 1:4156784/1‑68 (MQ=255) gTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAg < 1:3762150/68‑1 (MQ=255) tCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGt > 1:2413858/1‑68 (MQ=255) tCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGt > 1:2920872/1‑68 (MQ=255) ttACCGACATTAAAAGTAACTTTTTTGAAATTGGAGATAATATTGGCACAGAAAATATATTCAGTTCg < 1:3552897/68‑1 (MQ=255) tACCGACATTAAAAGTAACTTTTTTGAAATTAGATATAATATTGGCACAGAAAATATATTCAGTTCGt < 1:2982516/68‑1 (MQ=255) tACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt < 1:2465077/68‑1 (MQ=255) tACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt < 1:1174941/68‑1 (MQ=255) tACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGt < 1:1048235/68‑1 (MQ=255) tACCGACAATAAAAGTAACTTTTATGAAAGTAGAGATAATATTGGCACAGAAATTATATTCAGTTCGt > 1:4445052/1‑68 (MQ=255) aCCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGtt > 1:1039631/1‑68 (MQ=255) ccGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGttt < 1:2765821/68‑1 (MQ=255) | ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACATTAAAAGTAACTTTTTTGAAATTAGAGATAATATTGGCACAGAAAATATATTCAGTTCGTTT > CP009273/3577494‑3577621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |