| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3577555 | NA (NA) | 54 (0.980) | 32/134 | 0.2 | 100% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
| ? | CP009273 | 4232204 = | 0 (0.000) | intergenic (‑22/+350) | xylE/malG | D‑xylose transporter/maltose transporter subunit | |||||
AAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > CP009273/4232139‑4232270 | tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTg > 1:38969‑M2/66‑68 (MQ=255) atgactaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:35629‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactttcaataagttggagtcattaccCTGATc < 1:947402‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactttcaataagttggagtcattaccCTGATc < 1:2021404‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:4167676‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:1869418‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATc < 1:1680839‑M2/6‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagtcggagtcattaccCTGATc < 1:3417333‑M2/6‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCtt < 1:1366442‑M2/8‑1 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCttt > 1:3381271‑M2/60‑68 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTa > 1:3449284‑M2/58‑68 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTa > 1:2977822‑M2/58‑68 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCa > 1:889832‑M2/55‑68 (MQ=255) catctggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:1450428‑M2/16‑1 (MQ=255) catcgggcattatcttaacataaaacaatttcaataagttggtgtcattaccCTGATCTTTTATCTGt < 1:4700067‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:2199223‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:4648304‑M2/16‑1 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt < 1:3813305‑M2/16‑1 (MQ=255) tcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGc < 1:1180935‑M2/18‑1 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAtt > 1:3385675‑M2/48‑68 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAtt < 1:226568‑M2/21‑1 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGa < 1:4179738‑M2/23‑1 (MQ=255) attatctcaacataaaacactatcaataagttggagtcattaccCTGATCTATTATCAGTGCATTGAt < 1:2539164‑M2/24‑1 (MQ=255) attaactgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAttgtt < 1:4482885‑M2/24‑3 (MQ=255) ttatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATg < 1:1570998‑M2/25‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGtt > 1:154352‑M2/42‑68 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTg > 1:1289354‑M2/41‑68 (MQ=255) ctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTgg < 1:1500700‑M2/29‑1 (MQ=255) ataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGt < 1:601027‑M2/35‑1 (MQ=255) acactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGc > 1:3550001‑M2/29‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:3620474‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa < 1:4314351‑M2/41‑1 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:1897862‑M2/28‑68 (MQ=255) cactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCa > 1:1784184‑M2/28‑68 (MQ=255) actatcaataagttggagtcattaccATGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAg > 1:2697737‑M2/27‑68 (MQ=255) ctatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGt < 1:1357973‑M2/43‑1 (MQ=255) tatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGtt < 1:1751632‑M2/44‑1 (MQ=255) atcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTa > 1:123235‑M2/24‑68 (MQ=255) caataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAg > 1:1319417‑M2/22‑68 (MQ=255) ataagttggagtcattaccCTGAGCTTTTATCAGTTCATTGATGTTGGAATTGTCAGGCAGTTAAGGc < 1:1385129‑M2/49‑1 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCa > 1:1091145‑M2/19‑68 (MQ=255) taagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCa < 1:1020699‑M2/50‑1 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:1896859‑M2/17‑68 (MQ=255) agttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAt > 1:4311506‑M2/17‑68 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:155775‑M2/58‑1 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:4570848‑M2/58‑1 (MQ=255) agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAt < 1:2973875‑M2/58‑1 (MQ=255) gtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCCGGCAGTTAAGGCAATTATCAtt > 1:3867170‑M2/10‑68 (MQ=255) gtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAtt > 1:2507477‑M2/10‑68 (MQ=255) gtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAATGTCAGGCAGTTATGGCAATTATCAtt > 1:3491397‑M2/10‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:1466983‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:3922657‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:2781866‑M2/2‑68 (MQ=255) cCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa > 1:1151347‑M2/2‑68 (MQ=255) | AAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > CP009273/4232139‑4232270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |