| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1551066 = | 51 (0.920) | 148 (2.680) | 48/134 | 0.0 | 73.5% | coding (185/432 nt) | osmC | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin |
| ? | CP009273 | = 1558208 | 56 (1.010) | coding (1783/2400 nt) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||
Only 100 of 199 total aligned reads displayed.
TTTGAAGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAT > CP009273/1550999‑1551130 | ggcaagcttccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatt > 1:1043312‑M1/68‑68 (MQ=255) gcaagcttccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTg > 1:1204832‑M1/67‑68 (MQ=255) gcaagcttccgcgatgacccagcgcccaagattttcgatttcaccaatctcttctgcgagaggaatTg < 1:324102‑M1/2‑1 (MQ=255) tGAAGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATgg > 1:251454/1‑68 (MQ=255) agcttccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGgcg > 1:2830440‑M1/64‑68 (MQ=255) aaGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGgcg < 1:4205186/68‑1 (MQ=255) aGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGgcgc < 1:88175/68‑1 (MQ=255) ggCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCt > 1:3943305/1‑68 (MQ=255) tccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCttt > 1:4721744‑M1/60‑68 (MQ=255) tccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCttt > 1:3363541‑M1/60‑68 (MQ=255) ccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTc > 1:726239‑M1/59‑68 (MQ=255) ccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTc > 1:720406‑M1/59‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcacctatctcttctgcgagaggaatTGGCGCTTTCa > 1:4102177‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:464628‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:3889198‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1971954‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa < 1:3823228‑M1/11‑1 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:4484060‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:2723709‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1437753‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1399224‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:2635642‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1176004‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattatcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1495904‑M1/58‑68 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:2868044/68‑1 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:983944/68‑1 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:3817249/68‑1 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:1173330/68‑1 (MQ=255) tgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAAt > 1:3904736‑M1/53‑68 (MQ=255) tgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAAt > 1:4137595‑M1/53‑68 (MQ=255) tgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGAGCTTTCATTAAt > 1:4608947‑M1/53‑68 (MQ=255) ggAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAAt < 1:1084528/68‑1 (MQ=255) gAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATg < 1:4577951/68‑1 (MQ=255) acccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGc > 1:1009629‑M1/51‑68 (MQ=255) acccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGc > 1:545144‑M1/51‑68 (MQ=255) ccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTg < 1:678529‑M1/20‑1 (MQ=255) accCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTgggg > 1:3026182/1‑68 (MQ=255) ccTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGa > 1:2422153/1‑68 (MQ=255) gaagaaCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGc < 1:1301162/68‑1 (MQ=255) agaaCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCgg > 1:2951710/1‑68 (MQ=255) agaaCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTACATTAATGCTGGGGGAAGCgg > 1:80150/1‑68 (MQ=255) tattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCggg > 1:3785735‑M1/38‑68 (MQ=255) tattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCggg > 1:2917560‑M1/38‑68 (MQ=255) attttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGa < 1:3585815‑M1/32‑1 (MQ=255) attttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGa < 1:3053902‑M1/32‑1 (MQ=255) ttttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGAt < 1:2179455‑M1/33‑1 (MQ=255) ttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTc < 1:639451‑M1/35‑1 (MQ=255) ttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTc < 1:1032015‑M1/35‑1 (MQ=255) ttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTc < 1:3478414‑M1/35‑1 (MQ=255) ttGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg < 1:489548/68‑1 (MQ=255) gatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg > 1:2243805‑M1/31‑68 (MQ=255) gatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg > 1:2646461‑M1/31‑68 (MQ=255) gattacaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg > 1:1955309‑M1/31‑68 (MQ=255) atttcaccaatttcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGc < 1:1011864‑M1/39‑1 (MQ=255) atttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGc < 1:3682431‑M1/39‑1 (MQ=255) tttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGcc < 1:1484077‑M1/40‑1 (MQ=255) tccccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa > 1:1520895‑M1/27‑68 (MQ=255) tcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa > 1:1765406‑M1/27‑68 (MQ=255) tcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa > 1:3635700‑M1/27‑68 (MQ=255) tcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa > 1:2474783‑M1/27‑68 (MQ=255) tcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa > 1:2450561‑M1/27‑68 (MQ=255) cgcagcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa < 1:2004629/68‑1 (MQ=255) cgcagcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCaa < 1:4123108/68‑1 (MQ=255) gcagcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAAc > 1:2748756/1‑68 (MQ=255) caccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAAc > 1:3607085‑M1/26‑68 (MQ=255) caccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAAc > 1:4327398‑M1/26‑68 (MQ=255) accaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACa > 1:869263‑M1/25‑68 (MQ=255) accaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACa > 1:2163437‑M1/25‑68 (MQ=255) accaatctcttctgcgagaggaatTGGCGCTTTCATAAATGCTGGGGGAAGCGGGATTCACGCCAACa > 1:206075‑M1/25‑68 (MQ=255) accaatctcttctgcgagaggaatTGGCGATTTCATTAATGCTGGGGGAAGCGGGATTCACGCAAACa < 1:4555946‑M1/44‑1 (MQ=255) ccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACAt < 1:2584336‑M1/45‑1 (MQ=255) gcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGTTTCACGCCAACATCGa > 1:1610967/1‑68 (MQ=255) gcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa < 1:4347796/68‑1 (MQ=255) gcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:2658808/1‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:1583235‑M1/21‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:1577262‑M1/21‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:441874‑M1/21‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:247999‑M1/21‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:4254615‑M1/21‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:4278101‑M1/21‑68 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:1885609‑M1/21‑68 (MQ=255) tctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTTACGCCAACATCGAt > 1:2523105‑M1/20‑68 (MQ=255) tctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt < 1:1826810‑M1/49‑1 (MQ=255) tctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt > 1:3919590‑M1/20‑68 (MQ=255) tctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt > 1:1859540‑M1/20‑68 (MQ=255) ctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAtt < 1:73062‑M1/50‑1 (MQ=255) tcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTg < 1:3507401‑M1/51‑1 (MQ=255) tctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATa < 1:4766839‑M1/54‑1 (MQ=255) tctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATa < 1:1908393‑M1/54‑1 (MQ=255) tctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATa < 1:2327952‑M1/54‑1 (MQ=255) tgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATacc < 1:1991924‑M1/56‑1 (MQ=255) tgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATacc < 1:1696528‑M1/56‑1 (MQ=255) gagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc > 1:30867‑M1/10‑68 (MQ=255) gagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc < 1:3299637‑M1/59‑1 (MQ=255) gTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc < 1:4633588/68‑1 (MQ=255) tctcAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCAccgcc < 1:2099616/68‑1 (MQ=255) aggaatTTGCGATTTAATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCAccgcc > 1:4592071‑M1/7‑68 (MQ=255) aggaatTGGCGCTTTCATTACTACTGGTGGTACCGGTATTCACGCCAACATCGATTGATACCAccgcc > 1:843632‑M1/7‑68 (MQ=255) tcAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGa > 1:1665163/1‑68 (MQ=255) tcAATGGCGCTTTCATTAATGCTGGAGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGa > 1:3420275/1‑68 (MQ=255) | TTTGAAGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAT > CP009273/1550999‑1551130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |