| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1551066 = | 51 (0.920) | 148 (2.680) | 48/134 | 0.0 | 73.5% | coding (185/432 nt) | osmC | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin |
| ? | CP009273 | = 1558208 | 56 (1.010) | coding (1783/2400 nt) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||
Only 100 of 204 total aligned reads displayed.
GGCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGCCGT > CP009273/1558142‑1558273 | ggCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATt > 1:1043312‑M2/1‑67 (MQ=255)ggCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATt < 1:3656709‑M2/68‑2 (MQ=255) cAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtgg > 1:4634840‑M2/1‑65 (MQ=255) aaGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAAc < 1:1969472/68‑1 (MQ=255) aGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcg < 1:86312‑M2/68‑6 (MQ=255) tCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGa < 1:3016719/68‑1 (MQ=255) ccGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttc > 1:726239‑M2/1‑58 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:1176004‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:4000527‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:3889198‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:1437753‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:3384507‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:2723709‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:2635642‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCCTGAAg < 1:1131239/68‑1 (MQ=255) cgcgATGACCCAGCGCCCAATATTATCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:1495904‑M2/1‑57 (MQ=255) gcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAgg < 1:4722622/68‑1 (MQ=255) cgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcatt < 1:1635625‑M2/68‑14 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcatta < 1:1025485‑M2/68‑15 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAgggg > 1:3830716/1‑68 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaat > 1:3904736‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaat > 1:4137595‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggagctttcattaat > 1:4608947‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGc < 1:3689059/68‑1 (MQ=255) aCCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgc > 1:1009629‑M2/1‑50 (MQ=255) aCCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgc > 1:545144‑M2/1‑50 (MQ=255) aCCCAGCGCCCAATATTTTCGATTTCACCAATATCTTCTGCGAGAGGAATAAACCGTGAAGGGGGcac > 1:2351205/1‑68 (MQ=255) ccAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctg < 1:678529‑M2/68‑21 (MQ=255) ccAGCGCACAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACAt < 1:126585/68‑1 (MQ=255) cAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATg < 1:249383/68‑1 (MQ=255) cgcCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGAcc > 1:1459808/1‑68 (MQ=255) gcCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctggggga < 1:1407839‑M2/68‑26 (MQ=255) gcCCAATATTTTCGATATCAACAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctggggga < 1:4104115‑M2/68‑26 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:2174402/68‑1 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:3094680/68‑1 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:1227911/68‑1 (MQ=255) cAATTTTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGc < 1:4267352/68‑1 (MQ=255) cAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGc < 1:4397950/68‑1 (MQ=255) tatTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggg > 1:2917560‑M2/1‑37 (MQ=255) tatTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggg > 1:3785735‑M2/1‑37 (MQ=255) atTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggga < 1:3053902‑M2/68‑33 (MQ=255) atTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggga < 1:3585815‑M2/68‑33 (MQ=255) ttttCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggat < 1:3341002‑M2/68‑34 (MQ=255) ttCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattc < 1:639451‑M2/68‑36 (MQ=255) ttCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattc < 1:3478414‑M2/68‑36 (MQ=255) ttCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGAt > 1:1204812/1‑68 (MQ=255) cGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcac < 1:3821572‑M2/68‑38 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:2797956‑M2/1‑30 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:2646461‑M2/1‑30 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:1356566‑M2/1‑30 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:2243805‑M2/1‑30 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:2061554‑M2/1‑30 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgc < 1:2852137‑M2/68‑40 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTg > 1:4481490/1‑68 (MQ=255) tttCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgcc < 1:1484077‑M2/68‑41 (MQ=255) tCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaa > 1:1765406‑M2/1‑26 (MQ=255) tCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaa > 1:3635700‑M2/1‑26 (MQ=255) tCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaa > 1:2450561‑M2/1‑26 (MQ=255) tCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaa > 1:2474783‑M2/1‑26 (MQ=255) cACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaac > 1:3607085‑M2/1‑25 (MQ=255) cACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaac > 1:4327398‑M2/1‑25 (MQ=255) aCCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaaca > 1:869263‑M2/1‑24 (MQ=255) aCCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaaca > 1:2163437‑M2/1‑24 (MQ=255) aCCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaaca < 1:1582912‑M2/68‑45 (MQ=255) aCCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaaca > 1:1998714‑M2/1‑24 (MQ=255) aCCAATCTCTTCTGCGAGAGGAATtggcgatttcattaatgctgggggaagcgggattcacgcaaaca < 1:4555946‑M2/68‑45 (MQ=255) ccAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacat < 1:2584336‑M2/68‑46 (MQ=255) cATTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatc < 1:4649529‑M2/68‑47 (MQ=255) aTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcga > 1:441874‑M2/1‑20 (MQ=255) aTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcga > 1:247999‑M2/1‑20 (MQ=255) aTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcga > 1:4278101‑M2/1‑20 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggatttacgccaacatcgat > 1:2523105‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat < 1:1826810‑M2/68‑50 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat > 1:1859540‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat > 1:1887957‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat > 1:3919590‑M2/1‑19 (MQ=255) ctctTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgatt < 1:1987655‑M2/68‑51 (MQ=255) ctctTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCaa > 1:3764521/1‑68 (MQ=255) ctctTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCaa > 1:82705/1‑68 (MQ=255) ctctTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCaa > 1:2791606/1‑68 (MQ=255) tcttctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattg > 1:2059602‑M2/1‑17 (MQ=255) cttctGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAgg > 1:2107242/1‑68 (MQ=255) ttctGCGAGAGGAATAAACCGAGAAGGGGGCACAAGACCATGCAGGGGATCGTGCCAGCGAGCAAggg < 1:1718445/68‑1 (MQ=255) tctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgata < 1:3929480‑M2/68‑55 (MQ=255) tctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgata < 1:1542873‑M2/68‑55 (MQ=255) tctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgata < 1:4766839‑M2/68‑55 (MQ=255) tctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgata < 1:4528169‑M2/68‑55 (MQ=255) tctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgata < 1:1609198‑M2/68‑55 (MQ=255) tctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgata < 1:2327952‑M2/68‑55 (MQ=255) gagaGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgataccacc < 1:1671010‑M2/68‑60 (MQ=255) agagGATTAAAGCGTGAAGGGGGCACATGACCTTGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCgtt < 1:3041497/68‑3 (MQ=255) agagGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGAt < 1:3504408/68‑1 (MQ=255) agagGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGAt < 1:591606/68‑1 (MQ=255) agagGAATAAACCGAGAAGTGGGCCCATGACCATGCAGGGGATCGTGCCAGCGAGAAAGGGCTTCGAt < 1:657965/68‑1 (MQ=255) gagGAATAAACCGTGAAGGGGGCACATGACGATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATg > 1:916659/1‑68 (MQ=255) agGAATttgcgatttaattaatgctgggggaagcgggattcacgccaacatcgattgataccaccgcc > 1:4592071‑M2/1‑6 (MQ=255) agGAATtggcgctttcattactactggtggtaccggtattcacgccaacatcgattgataccaccgcc > 1:843632‑M2/1‑6 (MQ=255) agGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgataccaccgcc > 1:1912693‑M2/1‑6 (MQ=255) agGAATAAACCGCGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGc < 1:3268569/68‑1 (MQ=255) gAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGCCg > 1:3008667/1‑68 (MQ=255) | GGCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGCCGT > CP009273/1558142‑1558273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |