| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 103,910 | (CTTCCAGGAC)1→2 | coding (867/918 nt) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 103898 = | 7 (0.100) | 65 (0.970) | 33/128 | 0.2 | 91.1% | coding (855/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| ? | CP009273 | = 103907 | 6 (0.090) | coding (864/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase | |||||
ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/103967‑103898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < CP009273/103907‑103841 ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGG < 1:5056521/68‑1ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGG < 1:6201491/68‑1 TGTCGTTATGCCAGTGCAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:5573326/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGa > 1:1526675/1‑67 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:2571184/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:1002706/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2883366/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:314947/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:6042064/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:3512072/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:3807357/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:3968611/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:6022130/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:4170020/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4523066/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:454082/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4549702/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:4827407/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:4831087/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT < 1:510963/68‑1 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:5415763/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:543744/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2559737/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2230700/1‑68 TGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGT > 1:2173195/1‑68 GTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC < 1:4421703/68‑1 TCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCC < 1:2067363/68‑1 GCCAGTACAGGTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCTTCGTCCTGGAAGGTCCTGGAAGG < 1:5182844/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCTACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:3161547/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:981582/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT > 1:4699663/1‑68 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:1854510/68‑1 CCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGT < 1:1973125/68‑1 GTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCAC < 1:2341794/68‑1 TACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGTAGGTCCTGGAAGGTCACA < 1:1878413/68‑1 TACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGGTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACA < 1:6220953/68‑1 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCCCAT > 1:5451697/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:1959266/1‑68 ACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACAT > 1:5453330/1‑68 GCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATT < 1:4423766/68‑1 GCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATT > 1:789124/1‑68 CTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTC > 1:4945296/1‑68 TGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCC > 1:3855401/1‑68 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:4930404/1‑68 GCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGC > 1:2372624/1‑68 TGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTG > 1:296178/1‑68 GGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTC > 1:687752/1‑68 GGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTC > 1:1112986/1‑68 GGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTC > 1:2560587/1‑68 cCCAACGGAAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCG < 1:4941849/67‑1 GCCAACGGCAGTTCTGCGTCGTCCTGGTAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCG < 1:4164499/68‑1 GCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCG < 1:4206004/68‑1 CCAACGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGC > 1:2902352/1‑68 CGGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGG < 1:2840222/68‑1 GGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGA > 1:2884818/1‑68 GGCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGACAGGA > 1:5422967/1‑68 GCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGAC > 1:5566226/1‑68 GCAGTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGAC > 1:4711755/1‑68 gtgCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGC < 1:3586741/65‑1 GTTCTGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGC < 1:1708079/68‑1 TCTGCGTCGTCCTGGAAGGGCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCT < 1:5468150/68‑1 TCTGCGTCGTCATGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCT > 1:873308/1‑68 TGCGTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGC < 1:3824252/68‑1 GTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGC > 1:4448448/1‑68 GTCGTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGC > 1:5736216/1‑68 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGT < 1:4154122/68‑1 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGT > 1:3332863/1‑68 GTCCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCATCCTGTTTCGCCAGGACAGCCTGCAGCAGT < 1:2339479/68‑1 GTCCTGGAAGGTCCTGCAACGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGT < 1:5880528/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCGGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:552796/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCTTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:2475800/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCTCCAGGACAGCCTGCAGCAGTTT < 1:270620/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:1459447/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:1353650/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:3918883/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:4453930/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:5882177/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:2652820/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:2183802/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTT < 1:4179958/68‑1 CCTGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGCACAGCCTGCAGCAGTTT < 1:4556344/68‑1 TGGAAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGT < 1:2341544/68‑1 TGGAAGGTCCTGGAAGGGCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGT < 1:1094983/68‑1 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT < 1:4452679/68‑1 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT > 1:3476009/1‑68 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT > 1:2960777/1‑68 AAGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTAT < 1:235031/68‑1 AGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCGGTTTGTTATT > 1:5375181/1‑68 AGGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATT < 1:4138632/68‑1 GGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCTGTTTGTTATTC > 1:3404484/1‑68 GGTCCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTC > 1:3191505/1‑68 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT > 1:5713018/1‑68 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:4483396/68‑1 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:2776701/68‑1 CCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < 1:1193209/68‑1 ATGTCGTTATGCCAGTACAGCTGAAGGCGCTTTGAAGGCCAACGGCAGTTCTGCGTCGTCCTGGAAGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/103967‑103898‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcCTGGAAGGTCACATATTCCCAGGCTTCCTGTTTCGCCAGGACAGCCTGCAGCAGTTTGTTATTCAGT < CP009273/103907‑103841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |