Predicted mutation
evidence seq id position mutation annotation gene description
JC CP009273 103,910 (CTTCCAGGAC)1→2 coding (867/918 nt) lpxC → UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 103898 =7 (0.100)65 (0.970) 33/128 0.2 91.1% coding (855/918 nt) lpxC UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase
?CP009273 = 103907 6 (0.090)coding (864/918 nt) lpxC UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase

Only 100 of 157 total aligned reads displayed.

CACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTT  >  CP009273/103840‑103969
                                                                   |                                                              
 aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg                                                               <  1:5882177‑M1/11‑1 (MQ=255)
 aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg                                                               <  1:1353650‑M1/11‑1 (MQ=255)
 aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg                                                               <  1:4453930‑M1/11‑1 (MQ=255)
 aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg                                                               <  1:2652820‑M1/11‑1 (MQ=255)
 aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg                                                               <  1:4179958‑M1/11‑1 (MQ=255)
 aaactgctgcaggctgtcctggcgaaacaggaagcccgggaatatgtgaccttccaggaccttccagg                                                               <  1:552796‑M1/11‑1 (MQ=255)
 aCTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGg                                                               >  1:5713018‑M2/1‑67 (MQ=255)
 aCTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGg                                                               <  1:4483396‑M2/68‑2 (MQ=255)
   actgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgacgttgcaggaccttccaggac                                                             <  1:5880528‑M1/13‑1 (MQ=255)
   actgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccaggac                                                             >  1:3332863‑M1/56‑68 (MQ=255)
   actgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccaggac                                                             <  1:4154122‑M1/13‑1 (MQ=255)
    gAATAACAAACAGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacc                                                            >  1:3404484‑M2/1‑64 (MQ=255)
     aaTAACAAACCGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacct                                                           >  1:5375181‑M2/1‑63 (MQ=255)
      gctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGgacgac                                                          >  1:4448448‑M1/53‑68 (MQ=255)
      aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt                                                          >  1:3476009‑M2/1‑62 (MQ=255)
      aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt                                                          >  1:2960777‑M2/1‑62 (MQ=255)
      aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt                                                          <  1:4452679‑M2/68‑7 (MQ=255)
      aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt                                                          <  1:235031‑M2/68‑7 (MQ=255)
         gcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCa                                                       <  1:3824252‑M1/19‑1 (MQ=255)
         aCAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGCCCTTCCAGgaccttcca                                                       <  1:1094983‑M2/68‑10 (MQ=255)
         aCAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttcca                                                       <  1:2341544‑M2/68‑10 (MQ=255)
           aggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCATGACGACGCAGa                                                     >  1:873308‑M1/48‑68 (MQ=255)
           aaaCTGCTGCAGGCTGTGCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:4556344‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGATTATGTGACCTTCCAGGACGACGCAGa                                                     >  1:4261159/1‑68 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:1459447‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:2652820‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:4179958‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:1353650‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:3918883‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:5882177‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:2183802‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGCGAAACAAGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:2475800‑M2/68‑12 (MQ=255)
           aaaCTGCTGCAGGCTGTCCTGGAGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg                                                     <  1:270620‑M2/68‑12 (MQ=255)
             gctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACgcagcac                                                   <  1:3586741‑M1/23‑4 (MQ=255)
             aCTGCTGCAGGCTGTCCTGGCGAAACAGGATGCCTGGGAATATGTGACCTTCCAGgaccttccaggac                                                   <  1:2339479‑M2/68‑14 (MQ=255)
             aCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggac                                                   >  1:3332863‑M2/1‑55 (MQ=255)
              ctgctgCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGGACGACGCAGAACt                                                  <  1:2548970/68‑1 (MQ=255)
                gtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGc                                                >  1:5566226‑M1/43‑68 (MQ=255)
                gtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGc                                                >  1:4711755‑M1/43‑68 (MQ=255)
                gctgcAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgac                                                >  1:5736216‑M2/1‑52 (MQ=255)
                 tcctgtcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGcc                                               >  1:5422967‑M1/42‑68 (MQ=255)
                 tcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGcc                                               >  1:2884818‑M1/42‑68 (MQ=255)
                  cctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCg                                              <  1:2840222‑M1/28‑1 (MQ=255)
                     aGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgcccttccaggacgacgcaga                                           <  1:5468150‑M2/68‑22 (MQ=255)
                       gCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaac                                         <  1:1708079‑M2/68‑24 (MQ=255)
                       cgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTTCCGTtggg                                         <  1:4941849‑M1/33‑2 (MQ=255)
                       cgaaacaggaagcctgggaatatgtgaccttccagGACCTACCAGGACGACGCAGAACTGCCGTTGGc                                         <  1:4164499‑M1/33‑1 (MQ=255)
                        gaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGcc                                        >  1:2560587‑M1/35‑68 (MQ=255)
                          gTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgc                                      >  1:4711755‑M2/1‑42 (MQ=255)
                           tCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgcc                                     >  1:2884818‑M2/1‑41 (MQ=255)
                            ccTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccg                                    <  1:2840222‑M2/68‑29 (MQ=255)
                                gCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttgg                                >  1:2902352‑M2/1‑36 (MQ=255)
                                 cGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggc                               <  1:4206004‑M2/68‑34 (MQ=255)
                                 cGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctaccaggacgacgcagaactgccgttggc                               <  1:4164499‑M2/68‑34 (MQ=255)
                                  gcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAgcgc                              >  1:4930404‑M1/25‑68 (MQ=255)
                                  gAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggcc                              >  1:1112986‑M2/1‑34 (MQ=255)
                                  gAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggcc                              >  1:2560587‑M2/1‑34 (MQ=255)
                                  gAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggcc                              >  1:687752‑M2/1‑34 (MQ=255)
                                      cAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttca                          >  1:296178‑M2/1‑30 (MQ=255)
                                       ggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCa                         >  1:3855401‑M1/20‑68 (MQ=255)
                                        gaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAg                        >  1:4945296‑M1/19‑68 (MQ=255)
                                         aatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGc                       >  1:789124‑M1/18‑68 (MQ=255)
                                            gCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgc                    >  1:2372624‑M2/1‑24 (MQ=255)
                                            atgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGt                    >  1:1959266‑M1/15‑68 (MQ=255)
                                            atgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGt                    >  1:5453330‑M1/15‑68 (MQ=255)
                                            atgggaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGt                    >  1:5451697‑M1/15‑68 (MQ=255)
                                             tgtgaccttccagGACCTTCCAGGACGACGCAGACCTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTa                   <  1:6220953‑M1/55‑1 (MQ=255)
                                             tgtgaccttccagGACCTACCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTa                   <  1:1878413‑M1/55‑1 (MQ=255)
                                                 ggAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttca               >  1:3855401‑M2/1‑19 (MQ=255)
                                                 accttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTgg               <  1:981582‑M1/59‑1 (MQ=255)
                                                 accttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTgg               >  1:4699663‑M1/10‑68 (MQ=255)
                                                 accttccagGACCTTCCAGGACGACGCAGAACTGCCGTAGGCCTTCAAAGCGCCTTCAGCTGTACTgg               <  1:3161547‑M1/59‑1 (MQ=255)
                                                  gAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcag              >  1:4945296‑M2/1‑18 (MQ=255)
                                                  ccttccagGACCTTCCAGGACGAAGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCACCTGTACTGGc              <  1:5182844‑M1/60‑1 (MQ=255)
                                                   aaTATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagc             <  1:4423766‑M2/68‑52 (MQ=255)
                                                      atGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgt          >  1:1959266‑M2/1‑14 (MQ=255)
                                                      atGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgt          >  1:5453330‑M2/1‑14 (MQ=255)
                                                       tgtgACCTTCCAGgaccttccaggacgacgcagacctgccgttggccttcaaagcgccttcagctgta         <  1:6220953‑M2/68‑56 (MQ=255)
                                                        gtgACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgtac        <  1:2341794‑M2/68‑57 (MQ=255)
                                                         gGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGa       <  1:2067363‑M1/67‑1 (MQ=255)
                                                          GACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGAc      <  1:4421703‑M1/68‑1 (MQ=255)
                                                           tCCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:1526675‑M1/2‑68 (MQ=255)
                                                           accttccaggaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgtactgg     <  1:1854510‑M2/68‑60 (MQ=255)
                                                           accttccaggaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgtactgg     <  1:1973125‑M2/68‑60 (MQ=255)
                                                           accttccaggaccttccaggacgacgcagaactgccgtaggccttcaaagcgccttcagctgtactgg     <  1:3161547‑M2/68‑60 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:4831087‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:543744‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:2230700‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:4549702‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     <  1:510963‑M1/68‑1 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:2173195‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:6042064‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:1002706‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     <  1:3807357‑M1/68‑1 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     <  1:3968611‑M1/68‑1 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACa     >  1:4523066‑M1/1‑68 (MQ=255)
                                                           ACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGCACTGGCATAACGACa     >  1:5573326‑M1/1‑68 (MQ=255)
                                                              ttCCATGACGCCGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACAttt  <  1:796250/68‑1 (MQ=255)
                                                              ttCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACAttt  <  1:1150603/68‑1 (MQ=255)
                                                              ttCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACAttt  <  1:5248431/68‑1 (MQ=255)
                                                                   |                                                              
CACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGACATTT  >  CP009273/103840‑103969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.