| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | CP009273 | 103,910 | (CTTCCAGGAC)1→2 | coding (867/918 nt) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 103898 = | 7 (0.100) | 65 (0.970) | 33/128 | 0.2 | 91.1% | coding (855/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| ? | CP009273 | = 103907 | 6 (0.090) | coding (864/918 nt) | lpxC | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase | |||||
Only 100 of 139 total aligned reads displayed.
CCGGTCATGCACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGAC > CP009273/103831‑103965 | ccGGTCATGCACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATAtgtg > 1:1273325/1‑68 (MQ=255)actgaataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagg > 1:5713018‑M1/68‑68 (MQ=255)actgaataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagg < 1:1193209‑M1/1‑1 (MQ=255)actgaataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagg < 1:4483396‑M1/1‑1 (MQ=255) gaataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggacc > 1:3191505‑M1/65‑68 (MQ=255) aataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggacct < 1:4138632‑M1/5‑1 (MQ=255) aataacaaaccgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggacct > 1:5375181‑M1/64‑68 (MQ=255) cATGCACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCtt < 1:1619481/68‑1 (MQ=255) ataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggacctt > 1:2960777‑M1/63‑68 (MQ=255) ataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggacctt > 1:3476009‑M1/63‑68 (MQ=255) ataacaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggacctt < 1:235031‑M1/6‑1 (MQ=255) acaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgcccttccaggaccttcca < 1:1094983‑M1/9‑1 (MQ=255) acaaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttcca < 1:2341544‑M1/9‑1 (MQ=255) cACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAg > 1:4395033/1‑68 (MQ=255) aaactgctgcaggctgtgctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg < 1:4556344‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg < 1:1459447‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg < 1:4453930‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg < 1:2652820‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccaggaccttccagg < 1:3918883‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggcgaaacaggaagcccgggaatatgtgaccttccaggaccttccagg < 1:552796‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggcgaaacaagaagcctgggaatatgtgaccttccaggaccttccagg < 1:2475800‑M1/11‑1 (MQ=255) aaactgctgcaggctgtcctggagaaacaggaagcctgggaatatgtgaccttccaggaccttccagg < 1:270620‑M1/11‑1 (MQ=255) aCTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGg < 1:2776701‑M2/68‑2 (MQ=255) aCTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGg < 1:4483396‑M2/68‑2 (MQ=255) aCTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGg < 1:1193209‑M2/68‑2 (MQ=255) aCTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGg > 1:5713018‑M2/1‑67 (MQ=255) actgctgcaggctgtcctggcgaaacaggatgcctgggaatatgtgaccttccaggaccttccaggac < 1:2339479‑M1/13‑1 (MQ=255) actgctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgacgttgcaggaccttccaggac < 1:5880528‑M1/13‑1 (MQ=255) gAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacc > 1:3191505‑M2/1‑64 (MQ=255) gAATAACAAACAGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacc > 1:3404484‑M2/1‑64 (MQ=255) aaTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacct < 1:4138632‑M2/68‑6 (MQ=255) aaTAACAAACCGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacct > 1:5375181‑M2/1‑63 (MQ=255) gctgcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGgacgac > 1:4448448‑M1/53‑68 (MQ=255) aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt < 1:4452679‑M2/68‑7 (MQ=255) aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt > 1:3476009‑M2/1‑62 (MQ=255) aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt < 1:235031‑M2/68‑7 (MQ=255) aTAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctt > 1:2960777‑M2/1‑62 (MQ=255) gcaggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCa < 1:3824252‑M1/19‑1 (MQ=255) aCAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGCCCTTCCAGgaccttcca < 1:1094983‑M2/68‑10 (MQ=255) aCAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttcca < 1:2341544‑M2/68‑10 (MQ=255) aggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGCCCTTCCAGGACGACGCAGa < 1:5468150‑M1/21‑1 (MQ=255) aggctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCATGACGACGCAGa > 1:873308‑M1/48‑68 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGATTATGTGACCTTCCAGGACGACGCAGa > 1:4261159/1‑68 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg < 1:1353650‑M2/68‑12 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg < 1:2183802‑M2/68‑12 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg < 1:5882177‑M2/68‑12 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg < 1:4179958‑M2/68‑12 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCCGGGAATATGTGACCTTCCAGgaccttccagg < 1:552796‑M2/68‑12 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGCGAAACAAGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg < 1:2475800‑M2/68‑12 (MQ=255) aaaCTGCTGCAGGCTGTCCTGGAGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccagg < 1:270620‑M2/68‑12 (MQ=255) gctgtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAAc < 1:1708079‑M1/23‑1 (MQ=255) aCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACGTTGCAGgaccttccaggac < 1:5880528‑M2/68‑14 (MQ=255) aCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggac > 1:3332863‑M2/1‑55 (MQ=255) aCTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggac < 1:4154122‑M2/68‑14 (MQ=255) gtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGc > 1:4711755‑M1/43‑68 (MQ=255) gtcctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGc > 1:5566226‑M1/43‑68 (MQ=255) gctgcAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgac > 1:5736216‑M2/1‑52 (MQ=255) gctgcAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgac > 1:4448448‑M2/1‑52 (MQ=255) cctggcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCg < 1:2840222‑M1/28‑1 (MQ=255) aGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccatgacgacgcaga > 1:873308‑M2/1‑47 (MQ=255) gcgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTgg > 1:2902352‑M1/37‑68 (MQ=255) gCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagcac < 1:3586741‑M2/68‑24 (MQ=255) gCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaac < 1:1708079‑M2/68‑24 (MQ=255) cgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTTCCGTtggg < 1:4941849‑M1/33‑2 (MQ=255) cgaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGc < 1:4206004‑M1/33‑1 (MQ=255) cgaaacaggaagcctgggaatatgtgaccttccagGACCTACCAGGACGACGCAGAACTGCCGTTGGc < 1:4164499‑M1/33‑1 (MQ=255) gaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGcc > 1:1112986‑M1/35‑68 (MQ=255) gaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGcc > 1:687752‑M1/35‑68 (MQ=255) gaaacaggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGcc > 1:2560587‑M1/35‑68 (MQ=255) tCCTGTCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgcc > 1:5422967‑M2/1‑41 (MQ=255) tCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgcc > 1:2884818‑M2/1‑41 (MQ=255) ccTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccg < 1:2840222‑M2/68‑29 (MQ=255) caggaagcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCa > 1:296178‑M1/31‑68 (MQ=255) cGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgacctaccaggacgacgcagaactgccgttggc < 1:4164499‑M2/68‑34 (MQ=255) cGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAgcg > 1:3360636/1‑68 (MQ=255) gcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAgcgc > 1:4930404‑M1/25‑68 (MQ=255) gcctgggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAgcgc > 1:2372624‑M1/25‑68 (MQ=255) gAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggcc > 1:2560587‑M2/1‑34 (MQ=255) gAAACAGGAAGCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggcc > 1:687752‑M2/1‑34 (MQ=255) ggaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCa > 1:3855401‑M1/20‑68 (MQ=255) gaatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAg > 1:4945296‑M1/19‑68 (MQ=255) aatatgtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGc > 1:789124‑M1/18‑68 (MQ=255) gCCTGGGAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgc > 1:4930404‑M2/1‑24 (MQ=255) atgggaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGt > 1:5451697‑M1/15‑68 (MQ=255) tgtgaccttccagGACCTTCCAGGACGACGCAGACCTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTa < 1:6220953‑M1/55‑1 (MQ=255) tgtgaccttccagGACCTACCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTa < 1:1878413‑M1/55‑1 (MQ=255) gtgaccttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTAc < 1:2341794‑M1/56‑1 (MQ=255) ggAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttca > 1:3855401‑M2/1‑19 (MQ=255) accttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTgg > 1:4699663‑M1/10‑68 (MQ=255) accttccagGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTgg < 1:1973125‑M1/59‑1 (MQ=255) accttccagGACCTTCCAGGACGACGCAGAACTGCCGTAGGCCTTCAAAGCGCCTTCAGCTGTACTgg < 1:3161547‑M1/59‑1 (MQ=255) gAATATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcag > 1:4945296‑M2/1‑18 (MQ=255) ccttccagGACCTTCCAGGACGAAGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCACCTGTACTGGc < 1:5182844‑M1/60‑1 (MQ=255) aaTATGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagc < 1:4423766‑M2/68‑52 (MQ=255) atGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgt > 1:1959266‑M2/1‑14 (MQ=255) atGTGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgt > 1:5453330‑M2/1‑14 (MQ=255) atGGGACCTTCCAGgaccttccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgt > 1:5451697‑M2/1‑14 (MQ=255) tgtgACCTTCCAGgacctaccaggacgacgcagaactgccgttggccttcaaagcgccttcagctgta < 1:1878413‑M2/68‑56 (MQ=255) gGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGa < 1:2067363‑M1/67‑1 (MQ=255) GACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGAc < 1:4421703‑M1/68‑1 (MQ=255) | CCGGTCATGCACTGAATAACAAACTGCTGCAGGCTGTCCTGGCGAAACAGGAAGCCTGGGAATATGTGACCTTCCAGGACGACGCAGAACTGCCGTTGGCCTTCAAAGCGCCTTCAGCTGTACTGGCATAACGAC > CP009273/103831‑103965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |