New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1104827 =	13 (0.190)	66 (0.940)	40/134	0.1	83.5%	coding (37/1536 nt)	opgG	osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein
	?	CP009273	= 1391495	NA (NA)					intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein

AAGATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1104893‑1104827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  CP009273/1391495‑1391429                                                                                                                                        AAGATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAG                                                                    <  1:2489555/68‑1    ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAA                                                                 >  1:2624880/1‑68    ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTGGAAGATCTATACAGGGTTGAGGAA                                                                 >  1:1234950/1‑68     TTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTATGGAAG                                                                >  1:2995877/1‑68      TGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGG                                                               <  1:3711478/68‑1       GAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGT                                                              <  1:409567/68‑1         GCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGC                                                            <  1:3203116/68‑1         GCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGC                                                            >  1:6024883/1‑68            TGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAA                                                         <  1:4975193/68‑1              CTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATA                                                       <  1:4926176/68‑1              CTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATA                                                       >  1:2674272/1‑68               TTTGCGACATCATCAATACTGAAAGCCCAGCTTGTAGATGTATACAGGGTTAAGGAAGGTGCGAATAA                                                      <  1:5841785/68‑1                   gGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGG                                                  <  1:2489353/67‑1                   CGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAACCGG                                                  >  1:5365512/1‑68                    GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 <  1:312887/68‑1                    GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 >  1:718332/1‑68                       ATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAA                                              >  1:4184930/1‑68                            CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         <  1:6079047/68‑1                              ATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTC                                       >  1:53513/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTTTACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:3096012/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:861587/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:2052078/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:4659966/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:1812879/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:1569009/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:5990283/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:1487022/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:842907/1‑68                                ACTGAAAGCCAAGCTTGAAGATGTATACAGGGTAAAGGAAGGTGCGAATAAGCGCGGAAAATCATCTC                                     >  1:4322127/1‑68                                 CTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                    <  1:5131244/68‑1                                 CTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                    <  1:4172944/68‑1                                 CTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                    <  1:439545/68‑1                                  TGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG                                   >  1:3325426/1‑68                                  TGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG                                   >  1:1370605/1‑68                                  TGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG                                   >  1:4294964/1‑68                                     AAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG                                >  1:5109093/1‑68                                      AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:4828663/68‑1                                      AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:4947182/68‑1                                        CCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT                             >  1:2413610/1‑68                                        CCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT                             >  1:758676/1‑68                                            GCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT                         <  1:6154268/68‑1                                            GCTTGAAGATGTATACAGGGGTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT                         <  1:2544926/68‑1                                            GCTTGAAGATGTATACAGGGATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT                         <  1:553890/68‑1                                             CTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC                        >  1:2344217/1‑68                                              TTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCA                       <  1:3188096/68‑1                                                GAAGATGTATACAGGGTTAATGAAGGTGCGATTAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                     <  1:5224381/68‑1                                                GAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                     <  1:5891910/68‑1                                                   GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  <  1:4624924/68‑1                                                   GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  >  1:5286475/1‑68                                                    ATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT                 <  1:4059389/68‑1                                                      GTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTT               <  1:3354381/68‑1                                                       TATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC              >  1:3125956/1‑68                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             <  1:2294950/68‑1                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             >  1:731075/1‑68                                                         TACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTT            <  1:5442973/68‑1                                                          accGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           <  1:3229750/65‑1                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:1170492/1‑68                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:745670/1‑68                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:3414655/1‑68                                                             GGGTTAAGGAAGGTTCGAATAAGCGGGGAATTGCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        <  1:5603577/68‑1                                                             GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:2801319/1‑68                                                               GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT      >  1:1623174/1‑68                                                               GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCGGACGCAGTAATTTCATTTCTTCATGTT      >  1:961680/1‑68                                                                 TAAGGAAGGTGCTAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG    >  1:411457/1‑68                                                                 TAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG    >  1:25171/1‑68                                                                   AGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  >  1:6177613/1‑68                                                                                                                                        AAGATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1104893‑1104827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  CP009273/1391495‑1391429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.