| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1104827 = | 13 (0.190) | 66 (0.940) | 40/134 | 0.1 | 83.5% | coding (37/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
| ? | CP009273 | = 1391495 | NA (NA) | intergenic (+146/‑127) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein | |||||
Only 100 of 154 total aligned reads displayed.
GTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTT > CP009273/1104760‑1104894 | gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:3454233/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:3297781/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:2209816/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:1774966/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAAATACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:3364206/68‑1 (MQ=255)ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcct > 1:6177613‑M1/68‑68 (MQ=255) tGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGtt > 1:34459/1‑68 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttccTTa > 1:411457‑M1/66‑68 (MQ=255) aacatgaagaaatgaaattactgcgtccgccgagaagaatttccccgcttattcgcaccttccTTAAc > 1:961680‑M1/64‑68 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAc > 1:1623174‑M1/64‑68 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagcaattccccgcttattcgaaccttccTTAAccc < 1:5603577‑M1/7‑1 (MQ=255) tAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggctg < 1:5004570‑M2/68‑6 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGt > 1:1170492‑M1/59‑68 (MQ=255) aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGta < 1:5442973‑M1/11‑1 (MQ=255) aTTATGAATCATAAACTACAAATGATGATAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggt > 1:3235116‑M2/1‑61 (MQ=255) aTTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggt > 1:3968123‑M2/1‑61 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:2294950‑M1/12‑1 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat > 1:731075‑M1/57‑68 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtata > 1:3125956‑M1/56‑68 (MQ=255) aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATAc < 1:3354381‑M1/14‑1 (MQ=255) tGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACa > 1:1499188/1‑68 (MQ=255) atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACAt < 1:4059389‑M1/16‑1 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATc > 1:5286475‑M1/52‑68 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATc < 1:4624924‑M1/17‑1 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTc < 1:5891910‑M1/20‑1 (MQ=255) gactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAg > 1:2344217‑M1/46‑68 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccTTATCCCTGTATACATCTTCAAGc < 1:553890‑M1/24‑1 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccTTACCCCTGTATACATCTTCAAGc < 1:2544926‑M1/24‑1 (MQ=255) aaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccc > 1:4572579‑M2/1‑48 (MQ=255) aaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccc > 1:2910947‑M2/1‑48 (MQ=255) aaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccc > 1:3838235‑M2/1‑48 (MQ=255) aCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccca < 1:4793908‑M2/68‑22 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggcaggtgcgaacaagtccctg < 1:5391015‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacatgtcccag < 1:4380772‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctg > 1:2010723‑M2/1‑46 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtcactg < 1:2591094‑M2/68‑23 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTggg > 1:758676‑M1/41‑68 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:3656241‑M2/1‑44 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat < 1:2395551‑M2/68‑25 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:2001108‑M2/1‑44 (MQ=255) aCAAATGATGAAAATGCGATGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:5115479‑M2/1‑44 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:4947182‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:4828663‑M1/30‑1 (MQ=255) aaaTGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatat > 1:4257452‑M2/1‑42 (MQ=255) aaTGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaattccctgatatg < 1:5931914‑M2/68‑28 (MQ=255) aaTGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatg < 1:4049920‑M2/68‑28 (MQ=255) atgatgAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatga < 1:4268576‑M2/68‑29 (MQ=255) atgatgAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatga > 1:501621‑M2/1‑40 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag > 1:2860883‑M2/1‑39 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag > 1:2695500‑M2/1‑39 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag < 1:6002376‑M2/68‑30 (MQ=255) tgatgaAAATGCGCTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag < 1:3722898‑M2/68‑30 (MQ=255) ccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCa > 1:1370605‑M1/35‑68 (MQ=255) cgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAg < 1:5131244‑M1/35‑1 (MQ=255) cgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAg < 1:439545‑M1/35‑1 (MQ=255) cgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAg < 1:4172944‑M1/35‑1 (MQ=255) gagatgattttccgcgcttattcgcaccttccTTTACCCTGTATACATCTTCAAGCTTGGCTTTCAGt > 1:4322127‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:842907‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:861587‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1812879‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1569009‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:2052078‑M1/33‑68 (MQ=255) gaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTAt > 1:53513‑M1/31‑68 (MQ=255) aaaaTGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcat > 1:1144322‑M2/1‑34 (MQ=255) aaaaTGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcat > 1:1557602‑M2/1‑34 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:6079047‑M1/40‑1 (MQ=255) aaTGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgt < 1:812911‑M2/68‑37 (MQ=255) ttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTgatgat > 1:4184930‑M1/24‑68 (MQ=255) ttggttgAGTGCTGCAGTAATGTTGAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca > 1:6169869‑M2/1‑26 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:312887‑M1/48‑1 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc > 1:718332‑M1/21‑68 (MQ=255) gttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 1:1799827‑M2/68‑46 (MQ=255) ccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGtcc < 1:2489353‑M1/49‑2 (MQ=255) gAGTGCTGCAGTAATGTTAAggaaggtgcgaacaattccctgatatgagatcatgtttgtcatctgga > 1:1562795‑M2/1‑20 (MQ=255) gAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:5055129‑M2/1‑20 (MQ=255) gAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:2985180‑M2/1‑20 (MQ=255) ttattcgcaccttccTTAACCCTGTATACATCTACAAGCTGGGCTTTCAGTATTGATGATGTCGCaaa < 1:5841785‑M1/53‑1 (MQ=255) tattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaag > 1:2674272‑M1/15‑68 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagctcatgtttgtcaactggagcc < 1:5850505‑M2/68‑52 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:3965936‑M2/1‑17 (MQ=255) tgctgcAGTAATGTTAAggaagctgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:1190003‑M2/1‑17 (MQ=255) tgctgcAGTAATGTTAAggaaagtgcgaacaggtccctgatatgagatcatgtttgtcatctggagcc < 1:4580393‑M2/68‑52 (MQ=255) ttcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagca < 1:4975193‑M1/56‑1 (MQ=255) gctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 1:2266515‑M2/68‑53 (MQ=255) gctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca < 1:4903733‑M2/68‑53 (MQ=255) ctgcAGTAATGTTAAggaaggtgcgaccaagtccctgatatgagatcatgtttgtcatctggagccat > 1:3037244‑M2/1‑15 (MQ=255) gcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagcaagc < 1:3203116‑M1/59‑1 (MQ=255) gcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagcaagc > 1:6024883‑M1/10‑68 (MQ=255) gcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 1:4832871‑M2/1‑13 (MQ=255) gcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 1:3729773‑M2/1‑13 (MQ=255) cAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga > 1:4647559‑M2/1‑12 (MQ=255) accttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTc < 1:409567‑M1/61‑1 (MQ=255) cttccATAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCaa > 1:2995877‑M1/6‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:2624880‑M1/5‑68 (MQ=255) ttccTCAACCCTGTATAGATCTTCCAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:1234950‑M1/5‑68 (MQ=255) aaTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:3010916‑M2/68‑61 (MQ=255) tGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:1450984‑M2/68‑63 (MQ=255) gTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 1:3429072‑M2/68‑64 (MQ=255) cTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCtt < 1:2489555‑M1/67‑1 (MQ=255) ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 1:1491277‑M2/1‑4 (MQ=255) | GTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTT > CP009273/1104760‑1104894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |