| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1551066 = | 63 (0.900) | 77 (1.100) | 34/134 | 0.3 | 58.1% | coding (185/432 nt) | osmC | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin |
| ? | CP009273 | = 1558208 | 48 (0.690) | coding (1783/2400 nt) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||
GCGGTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1551126‑1551066‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGAAGCTTGC < CP009273/1558208‑1558143 GCGGTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTC > 1:298891/1‑68GCGGTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTC > 1:1337272/1‑68 GGTGGTATCAATCGATGTTGGCGTGAATTCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTC < 1:3710358/68‑1 GGTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTC < 1:1068495/68‑1 GGTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTC > 1:3648875/1‑68 GTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCG < 1:193937/68‑1 GGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCA < 1:4419781/68‑1 TATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGA < 1:4081805/68‑1 TATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGA < 1:2392805/68‑1 TATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCAGTTATGAAAGCGCCAATTCCTCTCGCAGA > 1:6078909/1‑68 CAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGA > 1:3480917/1‑68 AATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAG < 1:4926400/68‑1 AATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAG < 1:2000483/68‑1 ATCGATGTTGGCGTGAATCCCGCTTCCGCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGA > 1:5201988/1‑68 ATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGA > 1:2894207/1‑68 ATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGA > 1:4218530/1‑68 ATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGA > 1:4925563/1‑68 TCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGAT > 1:5981166/1‑68 TCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGAT > 1:97072/1‑68 TCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGAT > 1:462609/1‑68 TCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGAT > 1:4808800/1‑68 GATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTG < 1:3568515/68‑1 ATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGG < 1:2968760/68‑1 TGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGT > 1:1150088/1‑68 TGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGT > 1:3558093/1‑68 TGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGT > 1:4888334/1‑68 TTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGA > 1:1277059/1‑68 TTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATACCTCTCGCAGAAGAGATTGGTGA > 1:2799902/1‑68 GGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAA < 1:6174528/68‑1 GCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAAT < 1:375764/68‑1 GCGTGAATCCCGCTTCCCACAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAAT < 1:2384337/68‑1 CGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGATATC > 1:3137986/1‑68 CGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATg > 1:1050324/1‑67 CGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATC > 1:3297026/1‑68 CGTGAATCCCGCTTCCCACAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATC > 1:3569174/1‑68 GTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCG < 1:2665925/68‑1 GTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCG < 1:185197/68‑1 TGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGA > 1:6178029/1‑68 TCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAAT < 1:160021/68‑1 TCCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAAT < 1:5114746/68‑1 CCCGCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATA > 1:673524/1‑68 GCTTCCCCCAGCATTAATGAAAGCGCCATTTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTG > 1:597579/1‑68 GCTTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGATAATATTG > 1:733866/1‑68 TTCCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGG < 1:2600464/68‑1 CCCCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCG < 1:1279756/68‑1 CCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAATGCGAAAAAATTGGGCGCg > 1:5226845/1‑67 CCCAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCT > 1:953509/1‑68 CCCAGCATTAATGAAAGCGCCAATTCCACTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCT > 1:3346495/1‑68 CAGCATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGG < 1:6123331/68‑1 ATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCA > 1:4006197/1‑68 ATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCA > 1:5558611/1‑68 ATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCA > 1:3710452/1‑68 ATTAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGAGAAATCGAAAATATTGGGCGCTGGGTCA > 1:1614115/1‑68 tacTGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATC < 1:811689/65‑1 TAATGTAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATC < 1:5160332/68‑1 TAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAACTCGAAAATATTGGGCGCTGGGTCATC < 1:5435414/68‑1 TAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATC < 1:3050367/68‑1 TAATGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATC < 1:820474/68‑1 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTGATCGCG > 1:1231963/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:1729580/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:1805331/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:2097059/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:2803285/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:4176817/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:2885671/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:3139121/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:4757535/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:4285123/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATAGGGCGCTGGGTCATCGCG > 1:2233585/1‑68 TGAAAGCGCCAATTCCTCTCGCAGAAGAGATTGGGGAAATCGAAAATATTGGGCGCTGGGTCATCGCG > 1:5014123/1‑68 AAAGCGCCAATTCCTCTCGCAGAAGAGATTTGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGA > 1:3242911/1‑68 AAAGCGCCAATTCCTATCGCAGCAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGA > 1:4509445/1‑68 AAAGCGCCAATTACTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGA > 1:3658000/1‑68 AGCGCCAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGAAG > 1:1275870/1‑68 AGCGCCAATTCCTCTCGCAGAAGAGATTGGGGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGAAG < 1:1366194/68‑1 AGCGCCAATTCCTCTAGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGAAG < 1:3939289/68‑1 CAATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGAAGCTTGC < 1:687702/68‑1 GCGGTGGTATCAATCGATGTTGGCGTGAATCCCGCTTCCCCCAGCATTAATGAAAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1551126‑1551066‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTCCTCTCGCAGAAGAGATTGGTGAAATCGAAAATATTGGGCGCTGGGTCATCGCGGAAGCTTGC < CP009273/1558208‑1558143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |