| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1551066 = | 63 (0.900) | 77 (1.100) | 34/134 | 0.3 | 58.1% | coding (185/432 nt) | osmC | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin |
| ? | CP009273 | = 1558208 | 48 (0.690) | coding (1783/2400 nt) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||
Only 100 of 140 total aligned reads displayed.
TTGAAGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGATGT > CP009273/1551000‑1551132 | gcaagcttccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTg < 1:687702‑M1/2‑1 (MQ=255) aGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGgcgc < 1:3414594/68‑1 (MQ=255) ggCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCt > 1:4586791/1‑68 (MQ=255) cttccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgctagaggaatTGGCGCt < 1:3939289‑M1/7‑1 (MQ=255) cttccgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCt > 1:1275870‑M1/62‑68 (MQ=255) tccgcgatgacccagcgcccaatattttcgatttcaccaatctctgctgcgataggaatTGGCGCttt > 1:4509445‑M1/60‑68 (MQ=255) cgcgatgacccagcgccctatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:2233585‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:2885671‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:4176817‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:4757535‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:2097059‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:2803285‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1805331‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1729580‑M1/58‑68 (MQ=255) cgcgatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:3139121‑M1/58‑68 (MQ=255) cgcgatcacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCa > 1:1231963‑M1/58‑68 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:5106199/68‑1 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:2539851/68‑1 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATCGCGCTTTCa < 1:239174/68‑1 (MQ=255) aaaaaGGAACCAACCCTGAAGAACTGATTGGCGAAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCa < 1:2731859/68‑1 (MQ=255) gatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTttcagta < 1:811689‑M1/14‑4 (MQ=255) gatgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTACATTa < 1:5160332‑M1/14‑1 (MQ=255) tgacccagcgcccaatattttcgatttctccaatctcttctgcgagaggaatTGGCGCTTTCATTAAt > 1:1614115‑M1/53‑68 (MQ=255) tgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAAt > 1:5558611‑M1/53‑68 (MQ=255) tgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAAt > 1:4006197‑M1/53‑68 (MQ=255) tgacccagcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAAt > 1:3710452‑M1/53‑68 (MQ=255) gcaaccaaccCTGAAGAACTGATTGGCGCAGCGCAGGCCGCATGTTTCTCAATGGCGCTTTCATTAAt < 1:566177/66‑1 (MQ=255) accaaccCTGAAGAACTGATTGGCGCAGCGCATGCCGCAAGTTTCTCAATGGCGCTTTCATTAATGCt > 1:807749/1‑68 (MQ=255) caaccCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATGAATGCTgg > 1:624257/1‑68 (MQ=255) cgcgcccaattttttcgcattcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTggg > 1:5226845‑M1/47‑68 (MQ=255) agcgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTggg > 1:953509‑M1/47‑68 (MQ=255) cgcccaatattttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTggggg < 1:1279756‑M1/24‑1 (MQ=255) caatattttcgatttcaccaatctcttctgcgagaggaaaTGGCGCTTTCATTAATGCTGGGGGAAGc > 1:597579‑M1/41‑68 (MQ=255) agaaCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCgg > 1:5931635/1‑68 (MQ=255) agaaCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCgg > 1:1034324/1‑68 (MQ=255) agaaCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCgg > 1:3225921/1‑68 (MQ=255) gaaCTGATTGGCGCAGCGCATGCCGCAAGTTTCTCAATGGCCCTTTCAATAATGCTCGGGGAATCggg > 1:6066055/1‑68 (MQ=255) attttcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGa < 1:160021‑M1/32‑1 (MQ=255) aCTGATTGGCGCAGCGGATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGAt > 1:2637170/1‑68 (MQ=255) aCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGAt < 1:71613/68‑1 (MQ=255) aCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGAt > 1:3625787/1‑68 (MQ=255) aCTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGAt > 1:1029696/1‑68 (MQ=255) tcgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCa > 1:6178029‑M1/33‑68 (MQ=255) cgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCAc < 1:2665925‑M1/37‑1 (MQ=255) cgatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCAc < 1:185197‑M1/37‑1 (MQ=255) ttGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg < 1:5096595/68‑1 (MQ=255) ttGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg < 1:2202786/68‑1 (MQ=255) ttGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg < 1:218233/68‑1 (MQ=255) ttGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg < 1:1945067/68‑1 (MQ=255) ttGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg < 1:1844569/68‑1 (MQ=255) gatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGTGGGAAGCGGGATTCACg > 1:3569174‑M1/31‑68 (MQ=255) gatttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg > 1:3297026‑M1/31‑68 (MQ=255) catttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACg > 1:1050324‑M1/31‑68 (MQ=255) atttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGTGGGAAGCGGGATTCACGc < 1:2384337‑M1/39‑1 (MQ=255) atttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGc < 1:375764‑M1/39‑1 (MQ=255) tttcaccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGcc < 1:6174528‑M1/40‑1 (MQ=255) cgcagcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGCGAAGCGGGATTCACGCCaa < 1:6206155/68‑1 (MQ=255) gcagcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAAc > 1:4310017/1‑68 (MQ=255) cagcgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACa < 1:3425073/68‑1 (MQ=255) accaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACa > 1:3558093‑M1/25‑68 (MQ=255) accaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACa > 1:1150088‑M1/25‑68 (MQ=255) ccaatctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACAt < 1:2968760‑M1/45‑1 (MQ=255) cgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCg > 1:898360/1‑68 (MQ=255) cgcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACAACg > 1:739666/1‑68 (MQ=255) gcaTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa < 1:544055/68‑1 (MQ=255) atctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGa > 1:4808800‑M1/21‑68 (MQ=255) tctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt > 1:4925563‑M1/20‑68 (MQ=255) tctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt > 1:4218530‑M1/20‑68 (MQ=255) caTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt < 1:1757349/68‑1 (MQ=255) caTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt < 1:4880380/68‑1 (MQ=255) caTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt < 1:4903319/68‑1 (MQ=255) caTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt < 1:6214604/68‑1 (MQ=255) caTGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAt < 1:5281905/68‑1 (MQ=255) ctcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGAtt < 1:4926400‑M1/50‑1 (MQ=255) tcttctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTg > 1:3480917‑M1/18‑68 (MQ=255) tGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTg < 1:3173944/68‑1 (MQ=255) tGCCGCATGTTTCTCAATGGCGCTGTCATTAATGCTGGGGGAAGCGGGAATCACGCCAACATCGATTg < 1:2151155/68‑1 (MQ=255) gCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGa > 1:3358030/1‑68 (MQ=255) ccGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGAt > 1:5127215/1‑68 (MQ=255) tctgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATa < 1:2392805‑M1/54‑1 (MQ=255) tctgcgagaggaatTGGCGCTTTCATAACTGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATa > 1:6078909‑M1/15‑68 (MQ=255) gCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATac < 1:3129448/68‑1 (MQ=255) tgcgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATacc < 1:4419781‑M1/56‑1 (MQ=255) cgagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccac < 1:193937‑M1/58‑1 (MQ=255) gagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc < 1:1068495‑M1/59‑1 (MQ=255) gagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc > 1:3648875‑M1/10‑68 (MQ=255) gagaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGAATTCACGCCAACATCGATTGATaccacc < 1:3710358‑M1/59‑1 (MQ=255) gTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc < 1:4343738/68‑1 (MQ=255) gTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc > 1:2512018/1‑68 (MQ=255) gTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATaccacc < 1:4755100/68‑1 (MQ=255) tttCTCAATGGCGCTTTCAATAAAGCTGGGGGATGCGGGATTCACGCCAACATCGATTGATACCAccg > 1:5154840/1‑68 (MQ=255) gaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCAccgc > 1:298891‑M1/8‑68 (MQ=255) gaggaatTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCAccgc > 1:1337272‑M1/8‑68 (MQ=255) tctcAATGGCGCTTTCATTAATGCTGGTGGAAGCGGGACTCACGCCAACATCGATTGATACCAccgcc < 1:6009853/68‑1 (MQ=255) tctcAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATTCCAccgcc < 1:1023797/68‑1 (MQ=255) tctcAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCAccgcc < 1:4657109/68‑1 (MQ=255) aaTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAtg > 1:301741/1‑68 (MQ=255) aTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAtgt > 1:1873332/1‑68 (MQ=255) aTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAtgt > 1:3124977/1‑68 (MQ=255) aTGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGAtgt > 1:3290542/1‑68 (MQ=255) | TTGAAGGCGAAAAAGGAACCAACCCTGAAGAACTGATTGGCGCAGCGCATGCCGCATGTTTCTCAATGGCGCTTTCATTAATGCTGGGGGAAGCGGGATTCACGCCAACATCGATTGATACCACCGCCGATGT > CP009273/1551000‑1551132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |