| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1551066 = | 63 (0.900) | 77 (1.100) | 34/134 | 0.3 | 58.1% | coding (185/432 nt) | osmC | lipoyl‑dependent Cys‑based peroxidase, hydroperoxide resistance; salt‑shock inducible membrane protein; peroxiredoxin |
| ? | CP009273 | = 1558208 | 48 (0.690) | coding (1783/2400 nt) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator | |||||
Only 100 of 125 total aligned reads displayed.
GCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGCCGT > CP009273/1558143‑1558273 | gCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtg < 1:687702‑M2/68‑3 (MQ=255) aaGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAAc < 1:2082755/68‑1 (MQ=255) cTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCCCCAATCTCTTCTGCGAGAGGAATtggcgct < 1:1366194‑M2/68‑8 (MQ=255) cTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCTAGAGGAATtggcgct < 1:3939289‑M2/68‑8 (MQ=255) cTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgct > 1:1275870‑M2/1‑61 (MQ=255) ttCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTg < 1:1138817/68‑1 (MQ=255) cgcgATGACCCAGCGCCCTATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:2233585‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCCCCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:5014123‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:4176817‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:2885671‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:2803285‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:3139121‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:1805331‑M2/1‑57 (MQ=255) cgcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:1729580‑M2/1‑57 (MQ=255) cgcgATCACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttca > 1:1231963‑M2/1‑57 (MQ=255) gcgATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAgg < 1:4019239/68‑1 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcatta < 1:820474‑M2/68‑15 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcatta < 1:3050367‑M2/68‑15 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcagta < 1:811689‑M2/68‑15 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgcttacatta < 1:5160332‑M2/68‑15 (MQ=255) gATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAgggg < 1:4889842/68‑1 (MQ=255) gATGACCCAGCGCCCAATATTTTCGAGTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcatta < 1:5435414‑M2/68‑15 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCTCCAATCTCTTCTGCGAGAGGAATtggcgctttcattaat > 1:1614115‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaat > 1:3710452‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaat > 1:5558611‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaat > 1:4006197‑M2/1‑52 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGc < 1:6031380/68‑1 (MQ=255) tGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGCAATAAACCGTCAAGGGGGc < 1:2173706/68‑1 (MQ=255) tGACCCACCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGc < 1:5152490/68‑1 (MQ=255) ccAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctg < 1:6123331‑M2/68‑21 (MQ=255) ccAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACAt > 1:2995490/1‑68 (MQ=255) cAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATg < 1:4325258/68‑1 (MQ=255) cAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATg < 1:1588250/68‑1 (MQ=255) cgcgccCAATTTTTTCGCATTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctggg > 1:5226845‑M2/2‑46 (MQ=255) aGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGTGGAATtggcgctttcattaatgctggg > 1:3346495‑M2/1‑46 (MQ=255) aGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctggg > 1:953509‑M2/1‑46 (MQ=255) gcgcCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGAc < 1:4504936/68‑1 (MQ=255) gcgcCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGAc < 1:5121930/68‑1 (MQ=255) gcCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCa > 1:1852574/1‑68 (MQ=255) ccccATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:942149/68‑1 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaa < 1:2600464‑M2/68‑27 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:3558708/68‑1 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:6165120/68‑1 (MQ=255) cccAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCAt < 1:4230054/68‑1 (MQ=255) cAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGc < 1:1332604/68‑1 (MQ=255) cAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGc < 1:2209068/68‑1 (MQ=255) cAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAAAtggcgctttcattaatgctgggggaagc > 1:597579‑M2/1‑40 (MQ=255) tatTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggg > 1:673524‑M2/1‑37 (MQ=255) atTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggga < 1:5114746‑M2/68‑33 (MQ=255) atTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcggga < 1:160021‑M2/68‑33 (MQ=255) atTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAggg > 1:4705352/1‑68 (MQ=255) atTTTCGATTTCACCAATCTCTTCTGCGAGAGCAATAAGCCGTGAAGGGGGCACATGACCATGCAggg > 1:4561758/1‑68 (MQ=255) tttaCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAgggg < 1:1678839/68‑1 (MQ=255) tCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATc < 1:5304742/68‑1 (MQ=255) cGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcac < 1:2665925‑M2/68‑38 (MQ=255) cGATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcac < 1:185197‑M2/68‑38 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgtgggaagcgggattcacg > 1:3569174‑M2/1‑30 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:3297026‑M2/1‑30 (MQ=255) gATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGt < 1:4018557/68‑1 (MQ=255) gATATCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:3137986‑M2/1‑30 (MQ=255) catTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacg > 1:1050324‑M2/2‑30 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGATTAAACCGTGAAGGGGGCACATGACCTTGCAGGGGATCGTg > 1:2669729/1‑68 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgtgggaagcgggattcacgc < 1:2384337‑M2/68‑40 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgc < 1:375764‑M2/68‑40 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTg > 1:425673/1‑68 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTg > 1:3668474/1‑68 (MQ=255) aTTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTg > 1:5076204/1‑68 (MQ=255) tttCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgcc < 1:6174528‑M2/68‑41 (MQ=255) tCACCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaa > 1:1277059‑M2/1‑26 (MQ=255) tCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCa < 1:4475547/68‑1 (MQ=255) aCCAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaaca > 1:4888334‑M2/1‑24 (MQ=255) ccAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacat < 1:2968760‑M2/68‑46 (MQ=255) cAATCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatc < 1:3568515‑M2/68‑47 (MQ=255) cAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGa > 1:5797033/1‑68 (MQ=255) cAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGa < 1:1127147/68‑1 (MQ=255) aTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcga > 1:5981166‑M2/1‑20 (MQ=255) aTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcga > 1:4808800‑M2/1‑20 (MQ=255) aTCTCTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcga > 1:462609‑M2/1‑20 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat > 1:4925563‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat > 1:2894207‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgat > 1:4218530‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATtggcgctttcattaatgctggcggaagcgggattcacgccaacatcgat > 1:5201988‑M2/1‑19 (MQ=255) tctcTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGCGCa > 1:5289013/1‑68 (MQ=255) tctcTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCa > 1:1271173/1‑68 (MQ=255) tctcTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCa > 1:711972/1‑68 (MQ=255) ctctTCTGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgatt < 1:2000483‑M2/68‑51 (MQ=255) ctctTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCaa > 1:3519002/1‑68 (MQ=255) tcttctGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattg > 1:3480917‑M2/1‑17 (MQ=255) ctGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCt < 1:2656927/68‑1 (MQ=255) tGCGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgatacc < 1:4419781‑M2/68‑57 (MQ=255) cGAGAGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgataccac < 1:193937‑M2/68‑59 (MQ=255) gagaGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgataccacc < 1:1068495‑M2/68‑60 (MQ=255) gagaGGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgataccacc > 1:3648875‑M2/1‑9 (MQ=255) gagaGGAATtggcgctttcattaatgctgggggaagcggaattcacgccaacatcgattgataccacc < 1:3710358‑M2/68‑60 (MQ=255) cagggAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGAt < 1:1386400/65‑1 (MQ=255) agagGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGAt < 1:709576/68‑1 (MQ=255) gagGAATtggcgctttcattaatgctgggggaagcgggattcacgccaacatcgattgataccaccgc > 1:1337272‑M2/1‑7 (MQ=255) agGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGc < 1:6166142/68‑1 (MQ=255) agGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGc < 1:4653621/68‑1 (MQ=255) aaTAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGCCGt < 1:1931466/68‑1 (MQ=255) | GCAAGCTTCCGCGATGACCCAGCGCCCAATATTTTCGATTTCACCAATCTCTTCTGCGAGAGGAATAAACCGTGAAGGGGGCACATGACCATGCAGGGGATCGTGCCAGCGAGCAAGGGCTTCGATGCCGT > CP009273/1558143‑1558273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |