New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2060834	NA (NA)	3 (0.000)	3/134	5.1	0.15%	noncoding (1/1195 nt)	IS5	repeat region
	?	KX077536	= 3561	1997 (1.180)					intergenic (+162/‑543)	unknown/unknown	transposase/cbbM
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2060790‑2060834 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAATGCATTCTCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT  <  KX077536/3561‑3502                                                                                                           AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAATGCATTCTCTAGGGAAGGT                                       <  1:4383254/68‑1                           GGACTTGTTCGCACCTTCCATAATGCATTCTCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG             >  1:634180/1‑68                                      CACCTTCCATAATGCATTCTCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT  <  1:4089148/68‑1                                                                                                           AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2060790‑2060834 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAATGCATTCTCTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT  <  KX077536/3561‑3502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.