| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2060834 | NA (NA) | 3 (0.000) | 3/134 | 5.1 | 0.15% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | KX077536 | = 3561 | 1997 (1.180) | intergenic (+162/‑543) | unknown/unknown | transposase/cbbM | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTT > CP009273/2060767‑2060898 | gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc > 1:1121354/1‑68 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:486774/68‑1 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc > 1:724815/1‑68 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:414853/68‑1 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:326678/68‑1 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:2585887/68‑1 (MQ=35)catgaACCCTGTTCCATGGCACCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:1251411/67‑1 (MQ=255) tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCt < 1:4353844/68‑1 (MQ=35) tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCt > 1:2886070/1‑68 (MQ=35) aaCCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAg > 1:3200510/1‑68 (MQ=35) aCCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGa > 1:3788519/1‑68 (MQ=37) aCCCTGTTCCATGGCCCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGa > 1:1497609/1‑68 (MQ=255) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:6034211/1‑68 (MQ=39) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:512253/1‑68 (MQ=39) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:4216587/1‑68 (MQ=39) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:3349295/1‑68 (MQ=39) cccTGTTCCAAGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGaa > 1:4232174/1‑68 (MQ=255) ccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGacc > 1:283880/1‑66 (MQ=37) ccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAac > 1:2617426/1‑68 (MQ=40) ccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCGAGAac > 1:4722926/1‑68 (MQ=255) cTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAaca < 1:423103/68‑1 (MQ=255) tCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcaccac > 1:3983612/1‑68 (MQ=255) tCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcaccac > 1:1444732/1‑68 (MQ=255) tCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcaccac > 1:888200/1‑68 (MQ=255) tCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCAAGAAcaccac > 1:894449/1‑68 (MQ=255) cATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACaa > 1:5498359/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAttt > 1:726934/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAttt > 1:3097215/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAttt > 1:5167445/1‑68 (MQ=255) cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCg > 1:2786074/1‑68 (MQ=255) atttGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctct < 1:4182441/65‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctg > 1:4262910/1‑67 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctctc > 1:2022838/1‑68 (MQ=255) gtcAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:39943/66‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:538326/68‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:225217/68‑1 (MQ=255) gACAAACATCATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:148697/68‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAgg > 1:136990/1‑68 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAgg < 1:3170787/68‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAgg > 1:5796295/1‑68 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGAACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAgg > 1:3260447/1‑68 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCACGGTAAGGc > 1:74783/1‑68 (MQ=255) tGATCTCATATCAGGGTCATGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTATCGGTAAGGCa > 1:1931934/1‑68 (MQ=25) tGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCa > 1:5684916/1‑68 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAATACCTCAATTTCGCTCTCTCGGTAAGGCACt < 1:5388266/68‑1 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTg > 1:3126145/1‑68 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCCTACAACACCACAATATCGCACTCTCGGTAAGGCACTg > 1:3253591/1‑68 (MQ=25) ctcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGt > 1:188439/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGt > 1:1217656/1‑68 (MQ=255) agcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGt < 1:4343168/66‑1 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:4904093/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:4531262/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:2813691/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACAGTCACAg > 1:277942/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCAGAATTTCGCTCTCTCGGTAAGGCAATGTCACAGc > 1:1198863/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:1747649/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:1601861/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:3886863/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:550016/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:6079764/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:2733837/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:4271679/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:2739143/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:2217939/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:4465211/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:896013/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACAGTCACAGc > 1:5803572/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCACTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTAACAGc > 1:4349035/1‑68 (MQ=255) aGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAt < 1:965523/68‑1 (MQ=255) aGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAt < 1:5344069/68‑1 (MQ=255) gggACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAtt > 1:3853068/1‑68 (MQ=255) gggACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAtt > 1:1827609/1‑68 (MQ=255) ggACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTc > 1:3234846/1‑68 (MQ=255) aCTTGTTCGCCCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACTGCATTCaa > 1:2646133/1‑68 (MQ=255) aCTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCaa < 1:896633/68‑1 (MQ=255) gTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa < 1:1131483/68‑1 (MQ=255) gTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa < 1:3451049/68‑1 (MQ=255) cACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgtg < 1:4858271/68‑1 (MQ=255) cACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgtg < 1:1903712/68‑1 (MQ=255) aCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGa > 1:5313231/1‑68 (MQ=255) aCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGa > 1:2238606/1‑68 (MQ=255) ccTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGAc > 1:1800660/1‑68 (MQ=255) ccTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGAc > 1:1734014/1‑68 (MQ=255) ccTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGAc > 1:1323231/1‑68 (MQ=255) ttCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACtt < 1:3770126/68‑1 (MQ=255) | GATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTT > CP009273/2060767‑2060898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |