| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2060834 | NA (NA) | 3 (0.000) | 3/134 | 5.1 | 0.15% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | KX077536 | = 3561 | 1997 (1.180) | intergenic (+162/‑543) | unknown/unknown | transposase/cbbM | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 2007 total aligned reads displayed.
ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCAAGTCGC > KX077536/3494‑3628 | atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCAAGAGAATGCATtat < 1:1057817/68‑1 (MQ=255)atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTAATCCCACCTACCCTAGAGAATGCATtat < 1:2899499/68‑1 (MQ=17) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata > 1:2999980/1‑68 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata < 1:2768494/68‑1 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata < 1:2539621/68‑1 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata < 1:2358649/68‑1 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata > 1:2072664/1‑68 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata > 1:624422/1‑68 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATtata < 1:57837/68‑1 (MQ=255) tcaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCAAGAGAATGCATtata < 1:5385407/66‑1 (MQ=255) gaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTatat > 1:5607247/1‑68 (MQ=255) aatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGc > 1:429975/1‑68 (MQ=255) aatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGc > 1:3859586/1‑68 (MQ=255) aatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACATTCCCTAGAGAATGCATTATATGc > 1:2278418/1‑68 (MQ=255) atgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTAATCGCACCTTCCCTAGACAATCCATTATATGCa < 1:4942078/68‑1 (MQ=17) tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCAc < 1:3206790/68‑1 (MQ=255) tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCAc > 1:147727/1‑68 (MQ=255) tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCAc > 1:6067951/1‑68 (MQ=255) tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCAc < 1:2114429/68‑1 (MQ=255) tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCAc < 1:5319807/68‑1 (MQ=255) tgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTACCCTAGAGAATGCATTATATGCAc < 1:1633511/68‑1 (MQ=255) cTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTCGAGAATGCATTATATGCACTCa < 1:5893511/68‑1 (MQ=255) cTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCa < 1:1676192/68‑1 (MQ=255) cTGAGTCAGCCAAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCa < 1:5512739/68‑1 (MQ=255) tGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAg > 1:6016328/1‑68 (MQ=255) gAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAgc < 1:879035/68‑1 (MQ=255) gAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAgc < 1:3441269/68‑1 (MQ=255) gAGGCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAgc < 1:100028/68‑1 (MQ=255) gTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAgcgc < 1:1529330/68‑1 (MQ=255) gTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAgcgc < 1:3539906/68‑1 (MQ=255) gTCAGCCGAGAAGAATTTCACCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAgcgc > 1:5553395/1‑68 (MQ=255) tCAGCCGAGAAGAATTTCCCCGCTTATTCGCACGTTCCCTAGAGAATGCATTATATGCACTCAGCGCa > 1:1844446/1‑68 (MQ=255) tCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCa < 1:2431132/68‑1 (MQ=255) aGCCGAGAATAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGt < 1:4239018/68‑1 (MQ=255) aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGt < 1:3713066/68‑1 (MQ=255) aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGt < 1:3963106/68‑1 (MQ=255) aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGt < 1:4566053/68‑1 (MQ=255) aGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGt < 1:1580092/68‑1 (MQ=255) aGCCGAGAAGAATTTCCCCACTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGt < 1:450697/68‑1 (MQ=255) ccGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTgg > 1:4801755/1‑68 (MQ=255) ccGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTgg < 1:136270/68‑1 (MQ=255) cGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTggg > 1:2493045/1‑68 (MQ=255) agaagaATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGc < 1:5946957/68‑1 (MQ=255) aTTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTa < 1:2166018/68‑1 (MQ=255) tttGCCGGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTAc < 1:5194348/68‑1 (MQ=255) tttCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGTCATTTTAc < 1:403461/68‑1 (MQ=255) tttCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTAc < 1:3777639/68‑1 (MQ=255) tttCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTAc < 1:3913119/68‑1 (MQ=255) tttCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTAc < 1:2213114/68‑1 (MQ=255) ttCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACt > 1:2591894/1‑68 (MQ=255) ccGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAg < 1:5738664/68‑1 (MQ=255) tATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGc < 1:5836836/68‑1 (MQ=255) tATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGc < 1:2835660/68‑1 (MQ=255) aTTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCg < 1:725686/68‑1 (MQ=255) tCGCACCTTCCCTCGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTa < 1:813485/68‑1 (MQ=255) gCACCTTCCCTAGAGAATGGATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTAtt < 1:6133459/68‑1 (MQ=255) gCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTAtt < 1:948355/68‑1 (MQ=255) gCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTAtt < 1:3499800/68‑1 (MQ=255) gCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTAtt < 1:5051781/68‑1 (MQ=255) cTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGaa < 1:4854964/68‑1 (MQ=255) cTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGaa > 1:2958970/1‑68 (MQ=255) tCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGa < 1:3346738/68‑1 (MQ=255) cccTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGAt < 1:4097465/68‑1 (MQ=255) cTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCa < 1:4396632/68‑1 (MQ=255) tAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCaa > 1:3290865/1‑68 (MQ=255) tAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCaa > 1:1421278/1‑68 (MQ=255) agagAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAag < 1:4675368/68‑1 (MQ=255) agagAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAag > 1:5087793/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAtgag > 1:5445879/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:1118647/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:1735167/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:1793960/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:189750/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:774733/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:4717925/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:122124/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:5153909/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:4997021/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:3172473/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:4628656/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:2022149/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:4453819/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:434168/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:4172438/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag < 1:2628322/68‑1 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:36526/1‑68 (MQ=255) agaATGCATTATATGCACTCAGCGCAGTCGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAagag > 1:3585219/1‑68 (MQ=255) gaATGCATTATATGCACTCAGCGCAGTGGGTCATTTTTCTTTAGGTTCCGTATTGGAAGATCAACAGc > 1:3395472/1‑68 (MQ=255) gaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGc < 1:5273192/68‑1 (MQ=255) gaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGc > 1:1307196/1‑68 (MQ=255) gaATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGc > 1:1980098/1‑68 (MQ=255) aaTGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCATATTGGAAGATCAAGAGCa < 1:3809405/68‑1 (MQ=255) aTGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCAt > 1:3107281/1‑68 (MQ=255) gCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGCGCATCa > 1:5671866/1‑68 (MQ=255) gCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCa > 1:2314007/1‑68 (MQ=255) gCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCa > 1:1171765/1‑68 (MQ=255) gCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCa > 1:2701244/1‑68 (MQ=255) ttATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCAAGt > 1:673422/1‑68 (MQ=255) atatGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCAAGTCg > 1:12675/1‑68 (MQ=255) atatGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCAAGTCg < 1:3054923/68‑1 (MQ=255) | ATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAGAGAATGCATTATATGCACTCAGCGCAGTGGGGCATTTTACTTTAGGTTGCGTATTGGAAGATCAAGAGCATCAAGTCGC > KX077536/3494‑3628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |