| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270860 | NA (NA) | 103 (1.470) | 40/134 | 0.1 | 89.6% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 1104830 | 12 (0.170) | coding (40/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein | |||||
TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAG > CP009273/270795‑270922 | tgaACCCTGTTCTATGGCTCCAGATGACAAACGTGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1462280/1‑68 (MQ=18)tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCTCCTTCCgg > 1:4739259/1‑68 (MQ=18)tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4545144/1‑68 (MQ=33) gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa < 1:2713204/68‑1 (MQ=35) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg > 1:562324/1‑68 (MQ=39) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg > 1:1414402/1‑68 (MQ=39) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAggg > 1:2806609/1‑67 (MQ=39) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc > 1:5957979/1‑68 (MQ=40) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc > 1:6075485/1‑68 (MQ=40) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc > 1:1530097/1‑68 (MQ=40) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCg < 1:1277284/68‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:715068/68‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:1624966/68‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGCGACTTGTTCGCACCTTCCGGAGGCGt < 1:1367079/68‑1 (MQ=255) cTGTTCTATGGCTCCAGAAGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:2423434/68‑1 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:2257971/1‑68 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:5557748/1‑68 (MQ=255) cTATGGCTCCAGATCACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa < 1:4452388/68‑1 (MQ=255) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGc > 1:785873/1‑68 (MQ=255) aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGc > 1:409153/1‑68 (MQ=255) ggCTCCCGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg < 1:4740951/68‑1 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCATGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:436219/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:1502969/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:2689378/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:5694518/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:4541803/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATATCATATCAGGGACTTGTTCGCACCTTCCCGAGGCGTTATGAGCTg > 1:2138171/1‑68 (MQ=17) tCCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcg < 1:5825682/68‑1 (MQ=255) tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcg > 1:5335205/1‑68 (MQ=255) ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcgg < 1:4775431/68‑1 (MQ=255) tgttGACAATCATGCTCGCATATCAGGGTCTTGTTCGCACCTTCCGGAGGCGTTTTGAGCTGGCGGcc < 1:150676/65‑1 (MQ=21) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:2265916/68‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc < 1:3298480/68‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:2989153/68‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:3105437/68‑1 (MQ=255) gACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:4711609/68‑1 (MQ=255) gACAAACATGGTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:682101/68‑1 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa > 1:4265017/1‑68 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTa > 1:2038226/1‑68 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATc > 1:677845/1‑68 (MQ=255) gtctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTCGCGGCCCTTTTTGTATCTGa < 1:3254500/67‑1 (MQ=255) aTCTGATATCAGGGACTTGTTCGCACCATCCGGAGGCGTTTTGAGCTGGCGGCCCTTTTTGTATCTGa < 1:1867768/68‑1 (MQ=37) aTCTCATATCATGGACATTTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:2455478/68‑1 (MQ=38) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:1128214/68‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:4701270/68‑1 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat > 1:4882149/1‑68 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat > 1:2326762/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCGTTTTTGTATCTGatt > 1:5663717/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt < 1:2294729/68‑1 (MQ=255) ctaatatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:2987324/4‑68 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta < 1:802142/68‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta < 1:1836961/68‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta > 1:2580332/1‑68 (MQ=255) tcATATCAGGGACTTGATCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta < 1:6007876/68‑1 (MQ=255) cATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat < 1:3423094/68‑1 (MQ=255) cATATCAGGGACTTGATCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat < 1:3642250/68‑1 (MQ=255) atCAGGGTCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:2965537/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:1117472/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:2325568/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:3489716/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:2003400/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:4041573/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:2485497/1‑68 (MQ=255) gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:2496447/1‑68 (MQ=255) gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:5934173/1‑68 (MQ=255) gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:2396218/1‑68 (MQ=255) ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcccc > 1:5643969/1‑68 (MQ=255) gACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccccc > 1:2395799/1‑67 (MQ=255) gACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCa > 1:588477/1‑68 (MQ=255) ccTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAc < 1:5214501/67‑1 (MQ=255) aCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATcccccc > 1:4795881/1‑66 (MQ=255) aCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAc > 1:412206/1‑68 (MQ=255) aCTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAc > 1:5817605/1‑68 (MQ=255) ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAccc < 1:1326240/68‑1 (MQ=255) gTTCGCACCTTCCGGTGGCGTTATGAGCTGGCGGCCCTATATCAATCTGATTATTAATCCCCACCCGc < 1:5860300/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTTTCTGATTATTAATCCCCACCCGc < 1:4606973/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:5947586/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:3500569/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:1383777/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACACGc < 1:5624321/68‑1 (MQ=255) gTTCGCACCTTCCGGAGGCGTCATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGc < 1:1301287/68‑1 (MQ=255) tCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTa < 1:5295038/68‑1 (MQ=255) cccTTCCGGAGGCGTTATGAGCTGGCGGCCGTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa > 1:5430216/2‑68 (MQ=255) ccTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAg > 1:2458976/1‑68 (MQ=255) ccTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAg > 1:207869/1‑68 (MQ=255) ccTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAg > 1:4207015/1‑68 (MQ=255) | TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAG > CP009273/270795‑270922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |