| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270860 | NA (NA) | 103 (1.470) | 40/134 | 0.1 | 89.6% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 1104830 | 12 (0.170) | coding (40/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein | |||||
Only 100 of 178 total aligned reads displayed.
TTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGC > CP009273/1104764‑1104897 | aacatgaagaaatgaaattactgcgtccgccgagaagaatttccccgcttattcgcaccttccTTAAc > 1:961680‑M1/64‑68 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAccc > 1:2801319‑M1/62‑68 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTtaacccggt < 1:3229750‑M1/10‑4 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGt > 1:1170492‑M1/59‑68 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGt > 1:745670‑M1/59‑68 (MQ=255) aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGta < 1:5442973‑M1/11‑1 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:2294950‑M1/12‑1 (MQ=255) aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATAc < 1:3354381‑M1/14‑1 (MQ=255) tGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACa > 1:934638/1‑68 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATc < 1:4624924‑M1/17‑1 (MQ=255) aCATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaa < 1:2998924‑M2/68‑16 (MQ=255) cATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaag > 1:231490‑M2/1‑52 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTc < 1:5891910‑M1/20‑1 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttaatcgcaccttcaTTAACCCTGTATACATCTTc < 1:5224381‑M1/20‑1 (MQ=255) tgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCaa < 1:3188096‑M1/22‑1 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccTTATCCCTGTATACATCTTCAAGc < 1:553890‑M1/24‑1 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGc < 1:6154268‑M1/24‑1 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggcaggtgcgaacaagtccctg < 1:5391015‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctg > 1:2010723‑M2/1‑46 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtcactg < 1:2591094‑M2/68‑23 (MQ=255) tACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:5040671‑M2/1‑45 (MQ=255) tACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:4385533‑M2/1‑45 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTggg > 1:2413610‑M1/41‑68 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:415881‑M2/1‑44 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:2261857‑M2/1‑44 (MQ=255) aCAAATGATGAAAATGCGATGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:5115479‑M2/1‑44 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:4947182‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:4828663‑M1/30‑1 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCtt > 1:5109093‑M1/38‑68 (MQ=255) aaTGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatg < 1:4049920‑M2/68‑28 (MQ=255) atgatgAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatga > 1:501621‑M2/1‑40 (MQ=255) atgatgAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatga < 1:4268576‑M2/68‑29 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag > 1:2695500‑M2/1‑39 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag < 1:829911‑M2/68‑30 (MQ=255) ccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCa > 1:1370605‑M1/35‑68 (MQ=255) ccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCa > 1:3325426‑M1/35‑68 (MQ=255) gagatgattttccgcgcttattcgcaccttccTTTACCCTGTATACATCTTCAAGCTTGGCTTTCAGt > 1:4322127‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1812879‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:4659966‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:5990283‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:861587‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1569009‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:2052078‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTAAACATCTTCAAGCTGGGCTTTCAGt > 1:3096012‑M1/33‑68 (MQ=255) aaaaTGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcat > 1:1144322‑M2/1‑34 (MQ=255) aaTGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgt < 1:812911‑M2/68‑37 (MQ=255) ttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTgatgat > 1:4184930‑M1/24‑68 (MQ=255) ttggttgAGTGCTGCAGTAATGTTGAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca > 1:6169869‑M2/1‑26 (MQ=255) ttggttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 1:1790557‑M2/68‑43 (MQ=255) ggttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 1:5729889‑M2/1‑24 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:312887‑M1/48‑1 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc > 1:718332‑M1/21‑68 (MQ=255) ccggttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCg > 1:5365512‑M1/20‑68 (MQ=255) ccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGtcc < 1:2489353‑M1/49‑2 (MQ=255) ttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 1:422042‑M2/68‑47 (MQ=255) gAGTGCTGCAGTAATGTTAAggaaggtgcgaacaattccctgatatgagatcatgtttgtcatctgga > 1:1562795‑M2/1‑20 (MQ=255) gAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:2985180‑M2/1‑20 (MQ=255) tattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaag < 1:4926176‑M1/54‑1 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagctcatgtttgtcaactggagcc < 1:5850505‑M2/68‑52 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:3965936‑M2/1‑17 (MQ=255) tgctgcAGTAATGTTAAggaagctgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:1190003‑M2/1‑17 (MQ=255) tgctgcAGTAATGTTAAggaaagtgcgaacaggtccctgatatgagatcatgtttgtcatctggagcc < 1:4580393‑M2/68‑52 (MQ=255) ttcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagca < 1:4975193‑M1/56‑1 (MQ=255) ctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:3980437‑M2/1‑15 (MQ=255) gcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagcaagc > 1:6024883‑M1/10‑68 (MQ=255) gcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag > 1:3729773‑M2/1‑13 (MQ=255) cAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga > 1:4647559‑M2/1‑12 (MQ=255) aGTAATGTTAAggaaggtgcgaacaagtcactgatatgagatcatgattgtcttctggagccatagaa < 1:1892164‑M2/68‑58 (MQ=255) ccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCa < 1:3711478‑M1/62‑1 (MQ=255) aaTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:4063078‑M2/68‑61 (MQ=255) aaTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:4453026‑M2/68‑61 (MQ=255) aaTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:3010916‑M2/68‑61 (MQ=255) aTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 1:1551286‑M2/1‑7 (MQ=255) tGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:1450984‑M2/68‑63 (MQ=255) tGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:2956694‑M2/68‑63 (MQ=255) gTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 1:3429072‑M2/68‑64 (MQ=255) cTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCtt < 1:2489555‑M1/67‑1 (MQ=255) ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 1:1491277‑M2/1‑4 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc < 1:1570828‑M2/68‑66 (MQ=255) tAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTa > 1:3498554/1‑68 (MQ=255) aaggaagttgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:4897402‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatctgagatcatgtttgtcatctggagccatagaacagggttca > 1:2678695‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatattagatcatgtttgtcatctggagccatagaacagggttca > 1:5760477‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:1267376‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:5786566‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:5282588‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:6003004‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:2872919‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:4484811‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:369629‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:6214428‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttggcatctggagccatagaacagggttca > 1:2370351‑M2/1‑2 (MQ=255) aaggaaggggcgtacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:1623912‑M2/1‑2 (MQ=255) aaggaaggggcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:5940192‑M2/1‑2 (MQ=255) aggacggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat > 1:2564151‑M2/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaccagggttcat > 1:389959‑M2/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat > 1:3605259‑M2/1‑1 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc < 1:2668789/68‑1 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:3289274/1‑68 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:5291441/1‑68 (MQ=255) | TTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGC > CP009273/1104764‑1104897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |