| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270860 | NA (NA) | 112 (1.980) | 45/134 | 0.0 | 95.7% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 1104830 | 5 (0.090) | coding (40/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein | |||||
Only 100 of 112 total aligned reads displayed.
ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/270794‑270860‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAGTAA < CP009273/1104830‑1104764 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT < 1:4027044/68‑1ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1691500/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2279582/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2800784/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:3051646/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:616528/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:4991310/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2147471/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:1540013/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATAAGGGACTTGTTCGCACCTTCCT > 1:1475729/1‑68 TGACCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:4485852/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATTTCAGGGACTTGTTCGCACCTTCCTT > 1:4712617/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3383005/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:874418/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3395532/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3856150/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:1868730/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:2584394/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3921949/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:2449781/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:4123208/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:1227078/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:637215/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:639960/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCACATATCAGGGACTTGTTCGCACCTTCCTT > 1:1428461/1‑68 GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:1515436/68‑1 GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:4865067/68‑1 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA > 1:1824303/1‑68 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAA > 1:1480688/1‑68 AACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGCACTTGTACGCACCTTCCTTAA > 1:2663981/1‑68 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAC > 1:4434084/1‑68 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAC < 1:802298/68‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAC > 1:1104701/1‑68 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAC > 1:2427300/1‑68 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCTCCTTCCTTAACA > 1:4204065/1‑68 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACA < 1:443442/68‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACA < 1:1129833/68‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACA < 1:1899507/68‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACA < 1:1178698/68‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACAT > 1:1828776/1‑68 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATT < 1:2385119/68‑1 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATT < 1:1317279/68‑1 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTG > 1:1405046/1‑68 TCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACAATACTG > 1:5583300/1‑68 CTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGC < 1:3351718/68‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAG > 1:647584/1‑68 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAG > 1:2787919/1‑68 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAG > 1:1707880/1‑68 TGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGC < 1:1264554/68‑1 GGCTCCAGATGACTAACATGAGCTCATATCAGGGACTTGTGCGCACCTTCCTTAACATTACTGCAGCA < 1:5286834/68‑1 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA > 1:4158810/1‑68 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA > 1:4330365/1‑68 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA > 1:2303401/1‑68 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA > 1:4257859/1‑68 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA > 1:4161938/1‑68 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACT > 1:4267865/1‑68 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAAC < 1:4032906/68‑1 GATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACC > 1:5100732/1‑68 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACG > 1:2616516/1‑68 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACG > 1:1986599/1‑68 AACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCTTAACATTACTGCAGCACTCAACCAACGCAT > 1:1275838/1‑68 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCAT > 1:873377/1‑68 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCAT < 1:5182187/68‑1 AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCAT > 1:364879/1‑68 AACATGATCTCATATCAGGGACTTGTTCGCACATTCCTTAACATTCCTGCAGCACTCAACCAACGCAT < 1:4005030/68‑1 ACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATT < 1:302433/68‑1 CATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACATTACTGCAGCACTCAACCAACGCATat > 1:384489/1‑66 CATGATCTCATATCAGGGACTTGATCGCACCTACCTTAACATTACTGCAGAACTCAACCAACGCATTT > 1:2176095/1‑68 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATC > 1:3171536/1‑68 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATC > 1:3134564/1‑68 TCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATC > 1:2541794/1‑68 CTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCA > 1:2459536/1‑68 CTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCA > 1:4447789/1‑68 CTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCA > 1:765809/1‑68 TCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCAT > 1:407522/1‑68 ATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGT > 1:5428673/1‑68 ATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGT > 1:2260794/1‑68 TCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTA > 1:1724874/1‑68 TCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTA < 1:1343090/68‑1 TCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTA > 1:40382/1‑68 CAGCGACTTGTTCGCACCTTCCTTAACATTACTGCTGCACTCAACCAACGCATTTTCATCATTTGTAG < 1:5277788/68‑1 GGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACTCATTTTAATCATTTGAAGTT > 1:3714332/1‑68 GGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTT > 1:1542245/1‑68 ACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTAT > 1:1143444/1‑68 CTTGTTCGCACCTTCCTTAACAGTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTGGTTTATG > 1:1063504/1‑68 TTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGT < 1:40015/68‑1 TGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTT < 1:2709345/68‑1 TGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTT > 1:2359494/1‑68 GTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTT < 1:3519987/68‑1 TCGCACCTTCCTTACCATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCA > 1:654483/1‑68 TCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCA < 1:2131229/68‑1 TCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCA < 1:2473319/68‑1 GCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATA < 1:3953017/68‑1 GCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTACTTTATGTTTCATA > 1:226792/1‑68 ACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATATGTAGTTTATGTTTCATAAT > 1:4998977/1‑68 CCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATT > 1:4231221/1‑68 TTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAG < 1:5151211/68‑1 TTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAG < 1:5272636/68‑1 TTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAG < 1:3904174/68‑1 CCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAGTA > 1:2340665/1‑68 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/270794‑270860‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAGTAA < CP009273/1104830‑1104764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |