| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270860 | NA (NA) | 112 (1.980) | 45/134 | 0.0 | 95.7% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 1104830 | 5 (0.090) | coding (40/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein | |||||
ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAA > CP009273/270794‑270921 | atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCg > 1:2336570/1‑68 (MQ=31) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgt > 1:1760444/1‑67 (MQ=14) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:1870043/1‑68 (MQ=33) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:2392987/1‑68 (MQ=33) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCgg > 1:4558301/1‑68 (MQ=33) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:3692490/1‑68 (MQ=37) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:2495249/1‑68 (MQ=37) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg > 1:5382088/1‑68 (MQ=37) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:4609103/68‑1 (MQ=39) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:2318384/68‑1 (MQ=39) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg > 1:777483/1‑68 (MQ=39) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:2652928/68‑1 (MQ=39) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAgg < 1:2838435/68‑1 (MQ=39) cccTGTTCTATGGCTCGAGATGACAAACATGATCTCGTATGAGGGACTTGGTCGCACCGTCCGGAGGc > 1:4093695/1‑68 (MQ=14) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc > 1:2594846/1‑68 (MQ=40) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc > 1:5100250/1‑68 (MQ=40) ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCg < 1:5455388/68‑1 (MQ=255) cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGt < 1:1777028/68‑1 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:5079225/1‑68 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:1902224/1‑68 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:1686476/1‑68 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATg > 1:1189577/1‑68 (MQ=255) cTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGa < 1:4775632/68‑1 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGGTg > 1:3730040/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:2041397/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:2967215/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:5563471/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:8554/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTg > 1:1321443/1‑68 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGATATGAGCTg > 1:2646238/1‑68 (MQ=255) tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTggcg > 1:1143482/1‑68 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGccc > 1:2685249/1‑68 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:3470766/68‑1 (MQ=255) tGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtt < 1:719636/68‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:3145367/68‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:4568744/68‑1 (MQ=255) gACAAACATCATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt < 1:937374/68‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCtttt > 1:3159971/1‑68 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt > 1:3864016/1‑68 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:1032105/68‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:3362100/68‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt < 1:1024827/68‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGt > 1:2193566/1‑68 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:343728/1‑68 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt < 1:5348016/68‑1 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:5286895/1‑68 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt > 1:4425960/1‑68 (MQ=255) tGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCt > 1:965500/1‑68 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTg > 1:4262415/1‑68 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:3329910/68‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:5248627/68‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:2424112/68‑1 (MQ=255) aTCTCATATCAGGGACTTGATCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:4710134/68‑1 (MQ=255) aTCTCATATCAGGGACTTGATCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGa < 1:2783993/68‑1 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat > 1:5258454/1‑68 (MQ=255) tctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGat > 1:3301939/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:327844/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:319875/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt < 1:866125/68‑1 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatt > 1:3710977/1‑68 (MQ=255) ctcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCCTTTTGTATCTGatt > 1:1999105/1‑68 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGatta > 1:4757766/1‑68 (MQ=255) cATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat < 1:3763372/68‑1 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGGCCTTTTTGTATCTGATTATTaa > 1:2819058/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:2232434/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:990377/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:1471051/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTaa > 1:5028512/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATATGATTATTaa > 1:3104348/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:3977667/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:368371/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:1670814/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:4273382/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:1285224/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCGGAGGCGTCATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAAt > 1:434666/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCATCCGGAGGCGTTATGAGCTTGCGGCCCTTTTTGTATCTGATTATTAAt > 1:5274648/1‑68 (MQ=39) gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:3674340/1‑68 (MQ=255) gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc > 1:1433861/1‑68 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAcc > 1:46128/1‑68 (MQ=255) cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAcc > 1:2837171/1‑68 (MQ=255) cTTGTTCGCACCTTCCGGACGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAcc > 1:1058732/1‑68 (MQ=255) tCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTATGTATCTGATTATTAATACCCACCAGCTa > 1:21531/1‑68 (MQ=255) cGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAt < 1:1469190/68‑1 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa > 1:87845/1‑68 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa > 1:4588245/1‑68 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa > 1:2350839/1‑68 (MQ=255) aCCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTaa > 1:4808344/1‑68 (MQ=255) | ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAA > CP009273/270794‑270921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |