| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 354080 | 354088 | 9 | 39 [0] | [0] 40 | cynR | transcriptional activator of cyn operon; autorepressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 354079 | 0 (0.000) | 38 (0.670) | 26/134 | 0.4 | 100% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
| ? | CP009273 | 354089 = | 0 (0.000) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor | |||||
CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/354014‑354079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT > CP009273/354089‑354151 CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGTAATCCGCCATTAAGGAG > 1:2268292/1‑68CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAG > 1:3161916/1‑68 CGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGC < 1:4626661/68‑1 GACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCT < 1:1477865/68‑1 ACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTC < 1:1686127/68‑1 ACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTC < 1:5560413/68‑1 CCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAG < 1:5530543/68‑1 CCTGTAGCAGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAG < 1:5036911/68‑1 CTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGG > 1:4794514/1‑68 TGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGT > 1:3858040/1‑68 TAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGG < 1:87170/68‑1 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAATGTTGGG > 1:3167869/1‑68 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG < 1:103552/68‑1 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG > 1:5540309/1‑68 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG < 1:3441210/68‑1 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG > 1:79533/1‑68 GCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGG > 1:1686343/1‑68 CTGGAGCGTGATGCTGTGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGG > 1:4715922/1‑68 GCGTGATGCTGGGATAGCGCGCATAGAAATCCGACATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACG > 1:144831/1‑68 CGTGATGCTGGGATAGCGGGCATAGATATGCGCCATTAAGGAGTAGCTCGTAACGGTGGGGGTGACGG > 1:5377751/1‑68 GATGCTTGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGA < 1:3324744/68‑1 GATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGA < 1:1557377/68‑1 GATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGA < 1:4746276/68‑1 GCTGGTATAGCGAGCATAGATATCCGACATTAAGGAGTAGCTCGTAAAGGTTGGGGTGACGGCGATAC < 1:2639121/68‑1 GCTGGGATCGCGAGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGCCGATAC < 1:3171341/68‑1 TGGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGC > 1:4423024/1‑68 GGGATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCA < 1:590020/68‑1 ATAGCGCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCG > 1:1291211/1‑68 GCGCATAGAAATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCT > 1:4469608/1‑68 GCATAGAAATCCGCCATAAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCG < 1:3013314/68‑1 ATAGAATTCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCG > 1:5468411/1‑68 AATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGA < 1:1760276/68‑1 ATCCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGAT > 1:181041/1‑68 CCGCCATTAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCG > 1:5028207/1‑68 CCGCCATTAAGGAGTAGCTCGTAAAGGTGAGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCG > 1:4096283/1‑68 GCCATTAAGGAGTAGATCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGC < 1:5390984/68‑1 TAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT < 1:4589006/68‑1 TAAGGAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT < 1:3340814/68‑1 CCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/354014‑354079‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACAT > CP009273/354089‑354151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |