| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 354080 | 354088 | 9 | 39 [0] | [0] 40 | cynR | transcriptional activator of cyn operon; autorepressor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 354079 | 0 (0.000) | 38 (0.670) | 26/134 | 0.4 | 100% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
| ? | CP009273 | 354089 = | 0 (0.000) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor | |||||
TTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGA > CP009273/354023‑354156 | cctgcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagtaatccgccattaaggAg > 1:2268292‑M2/67‑68 (MQ=255)cctgcgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAg > 1:3161916‑M2/67‑68 (MQ=255) cgacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGc < 1:4626661‑M2/6‑1 (MQ=255) gacatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCt < 1:1477865‑M2/7‑1 (MQ=255) acatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTc < 1:5560413‑M2/8‑1 (MQ=255) acatttcctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTc < 1:1686127‑M2/8‑1 (MQ=255) cctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAg < 1:5530543‑M2/14‑1 (MQ=255) cctgtagcaggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAg < 1:5036911‑M2/14‑1 (MQ=255) ctgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAgg > 1:4794514‑M2/54‑68 (MQ=255) tgtagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGt > 1:3858040‑M2/53‑68 (MQ=255) tagctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgg < 1:87170‑M2/18‑1 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAATGTtggg > 1:3167869‑M2/49‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg < 1:103552‑M2/20‑1 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:79533‑M2/49‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:5540309‑M2/49‑68 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg < 1:3441210‑M2/20‑1 (MQ=255) gctggagcgtgatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTgggg > 1:1686343‑M2/49‑68 (MQ=255) ctggagcgtgatgctgtgatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTggggg > 1:4715922‑M2/48‑68 (MQ=255) gcgtgatgctgggatagcgcgcatagaaatccgacattaaggAGTAGCTCGTAAAGGTGGGGGTGACg > 1:144831‑M2/43‑68 (MQ=255) cgtgatgctgggatagcgggcatagatatgcgccattaaggAGTAGCTCGTAACGGTGGGGGTGACgg > 1:5377751‑M2/42‑68 (MQ=255) gatgcttggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGa < 1:3324744‑M2/30‑1 (MQ=255) gatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGa < 1:1557377‑M2/30‑1 (MQ=255) gatgctgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGa < 1:4746276‑M2/30‑1 (MQ=255) gctggtatagcgagcatagatatccgacattaaggAGTAGCTCGTAAAGGTTGGGGTGACGGCGATAc < 1:2639121‑M2/33‑1 (MQ=255) gctgggatcgcgagcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGCCGATAc < 1:3171341‑M2/33‑1 (MQ=255) tgggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGc > 1:4423024‑M2/34‑68 (MQ=255) gggatagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCa < 1:590020‑M2/36‑1 (MQ=255) atagcgcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCg > 1:1291211‑M2/30‑68 (MQ=255) gcgcatagaaatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCt > 1:4469608‑M2/25‑68 (MQ=255) gcatagaaatccgccataaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTcg < 1:3013314‑M2/46‑1 (MQ=255) atagaattccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTcgcg > 1:5468411‑M2/21‑68 (MQ=255) aatccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGa < 1:1760276‑M2/53‑1 (MQ=255) atccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGAt > 1:181041‑M2/15‑68 (MQ=255) ccgccattaaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCg > 1:5028207‑M2/13‑68 (MQ=255) ccgccattaaggAGTAGCTCGTAAAGGTGAGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCg > 1:4096283‑M2/13‑68 (MQ=255) gccattaaggAGTAGATCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGc < 1:5390984‑M2/58‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:4589006‑M2/63‑1 (MQ=255) taaggAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAAcat < 1:3340814‑M2/63‑1 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:3437198/1‑68 (MQ=255) aGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGa > 1:3204374/1‑68 (MQ=255) | TTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGATCGGCAACATCATGA > CP009273/354023‑354156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |