Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | CP009273 | 354,080 | Δ9 bp | coding (314‑322/900 nt) | cynR ← | transcriptional activator of cyn operon; autorepressor |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 354080 | 354088 | 9 | 39 [0] | [0] 40 | cynR | transcriptional activator of cyn operon; autorepressor |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 354079 | 0 (0.000) | 38 (0.670) | 26/134 | 0.4 | 100% | coding (323/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
? | CP009273 | 354089 = | 0 (0.000) | coding (313/900 nt) | cynR | transcriptional activator of cyn operon; autorepressor |
CTCCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGAT > CP009273/354012‑354142 | ctcCTGCGACATTACCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAgg < 1:3904765/68‑1 (MQ=255) ccTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGTAATCCGCCATTAAGGag > 1:2268292‑M1/1‑66 (MQ=255) ccTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGag > 1:3161916‑M1/1‑66 (MQ=255) cGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagc < 1:4626661‑M1/68‑7 (MQ=255) gACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagct < 1:1477865‑M1/68‑8 (MQ=255) aCATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctc < 1:5560413‑M1/68‑9 (MQ=255) aCATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctc < 1:1686127‑M1/68‑9 (MQ=255) ccTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaag < 1:5530543‑M1/68‑15 (MQ=255) ccTGTAGCAGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaag < 1:5036911‑M1/68‑15 (MQ=255) cTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaagg > 1:4794514‑M1/1‑53 (MQ=255) tGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggt > 1:3858040‑M1/1‑52 (MQ=255) tAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgg < 1:87170‑M1/68‑19 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaatgttggg > 1:3167869‑M1/1‑48 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg < 1:103552‑M1/68‑21 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg > 1:79533‑M1/1‑48 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg > 1:5540309‑M1/1‑48 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg > 1:1686343‑M1/1‑48 (MQ=255) gCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggg < 1:3441210‑M1/68‑21 (MQ=255) cTGGAGCGTGATGCTGTGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtggggg > 1:4715922‑M1/1‑47 (MQ=255) gCGTGATGCTGGGATAGCGCGCATAGAAATCCGACATTAAGGagtagctcgtaaaggtgggggtgacg > 1:144831‑M1/1‑42 (MQ=255) cGTGATGCTGGGATAGCGGGCATAGATATGCGCCATTAAGGagtagctcgtaacggtgggggtgacgg > 1:5377751‑M1/1‑41 (MQ=255) gATGCTTGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcga < 1:3324744‑M1/68‑31 (MQ=255) gATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcga < 1:4746276‑M1/68‑31 (MQ=255) gATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcga < 1:1557377‑M1/68‑31 (MQ=255) gCTGGTATAGCGAGCATAGATATCCGACATTAAGGagtagctcgtaaaggttggggtgacggcgatac < 1:2639121‑M1/68‑34 (MQ=255) gCTGGGATCGCGAGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacgccgatac < 1:3171341‑M1/68‑34 (MQ=255) tGGGATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgc > 1:4423024‑M1/1‑33 (MQ=255) gggATAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgca < 1:590020‑M1/68‑37 (MQ=255) aTAGCGCGCATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcg > 1:1291211‑M1/1‑29 (MQ=255) gcgcATAGAAATCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcct > 1:4469608‑M1/1‑24 (MQ=255) gcATAGAAATCCGCCATAAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcg < 1:3013314‑M1/68‑47 (MQ=255) aTAGAATTCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcg > 1:5468411‑M1/1‑20 (MQ=255) aaTCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcaga < 1:1760276‑M1/68‑54 (MQ=255) aTCCGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagat > 1:181041‑M1/1‑14 (MQ=255) ccGCCATTAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcg > 1:5028207‑M1/1‑12 (MQ=255) ccGCCATTAAGGagtagctcgtaaaggtgagggtgacggcgatacgcagcgatcctcgcgtcagatcg > 1:4096283‑M1/1‑12 (MQ=255) gCCATTAAGGagtagatcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggc < 1:5390984‑M1/68‑59 (MQ=255) tAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacat < 1:3340814‑M1/68‑64 (MQ=255) tAAGGagtagctcgtaaaggtgggggtgacggcgatacgcagcgatcctcgcgtcagatcggcaacat < 1:4589006‑M1/68‑64 (MQ=255) | CTCCTGCGACATTTCCTGTAGCTGGAGCGTGATGCTGGGATAGCGCGCATAGAAATCCGCCATTAAGGGGCCGATAAAGTAGCTCGTAAAGGTGGGGGTGACGGCGATACGCAGCGATCCTCGCGTCAGAT > CP009273/354012‑354142 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |