| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 657540 | 20 (0.320) | 19 (0.310) | 15/388 | 2.5 | 48.7% | intergenic (+39/+15) | cspE/crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel |
| ? | NC_000913 | 657545 = | 20 (0.320) | intergenic (+44/+10) | cspE/crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel | |||||
TGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCG‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/657276‑657540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATC‑AATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCC > NC_000913/657545‑657834 TGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCG‑GTTT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AA < 1:823555/299‑1 TCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCGTGTTT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG < 1:823566/294‑1 AAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTC‑AAACCCGCTTAATCAGC‑‑G‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTT < 1:823567/295‑1 GTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTC‑AAACCCGCTTAATCAGCG‑G‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAA < 1:823576/292‑1 CAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCGTGTTT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCC < 1:823580/191‑1 GTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCGTG‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAA < 1:823583/303‑1 TCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGCAAAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCGTGTTT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑‑AAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAA < 1:823585/239‑1 cgaatacactcAACGGTGCC‑AAAGGCCCTTCTGCTGCAAAACGTAATCGCTCTGTAAGATACGTCAAG‑CAAAGAATTC‑AAACCCGCTTAATCAGCG‑G‑TT‑‑GTTGGTC‑TTAGTGTGCGGTTGAGGCCG‑‑AAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAAACAAAAACACCACTTCTG < 1:86836/225‑1 AAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCG‑GTTT‑‑TTTGGTCTTT < 1:823588/105‑1 CC‑AAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTC‑AAACCCGCTTAATCAGCG‑G‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AA < 1:823589/161‑1 TCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGC‑‑G‑TG‑‑TTT‑GTC‑TTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAAGACCCCAGAAGGTTGACGAAAAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AAC‑AAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAAATGTTCGTCATC < 1:86840/271‑1 TAAGATACGTC‑AG‑C‑AAGAATTCAAA‑‑CCGCTTAATCAGC‑‑G‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATC‑AATGTTCGTCATCCTGCT < 1:823595/269‑1 AGATACGTC‑AG‑C‑AAGAATTC‑AAACCCGCTTAATCAGCG‑G‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AAC‑AAAACACCACTTCTGCCG‑AAAATGTTGAG < 1:823596/193‑1 AGATACGTC‑AG‑C‑AAGAATTC‑AAACCCGCTTAATCAGCG‑G‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGAC < 1:823597/121‑1 GATACGTC‑AGTC‑AACGATTCAAA‑‑CCGCTTAATCAGCG‑G‑TTTGTTTTGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGG < 1:86843/223‑1 ACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCG‑T‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCA < 1:823598/93‑1 G‑C‑AAGAATTCAAA‑‑CCGCTTAATCAGCG‑G‑TT‑‑GTT‑GTC‑TTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACGA‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCAC < 1:86845/230‑1 GAATTC‑AAACCCGCTTAATCAGCG‑T‑GT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AAC‑AAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATC‑AATGTTCGTCATCCTGCTGAACCATGC < 1:823599/263‑1 TTCAAAACCCGCTTAATCAGC‑‑G‑TG‑‑TTTGGTC‑TTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAAGACCCCAGAA‑GTTGACGA‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AAC‑AAAACACCACTTCTGCCGAAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATC‑AATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCC < 1:86844/312‑1 TGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAATGGTTTTAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AAGAATTCAAAACCCGCTTAATCAGCG‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/657276‑657540‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TT‑‑TTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCAGAAGGTTGACG‑‑‑AAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGT‑AACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATC‑AATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGCTGTCAGCGTCCCC > NC_000913/657545‑657834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |