New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 657540	20 (0.320)	19 (0.310)	15/388	2.5	48.7%	intergenic (+39/+15)	cspE/crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
	?	NC_000913	657545 =	20 (0.320)					intergenic (+44/+10)	cspE/crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel

GCATTTGTGTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGC  >  NC_000913/657256‑657821                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                   gCATTTGTGTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑‑AAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTTG‑GCTTTAG‑T‑‑GTGCGGt                                                                                                                                                                                                                                                                   >  1:823556/1‑309 (MQ=255)      tgtgTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTGG‑‑CTTTAG‑T‑‑GTGCGGt                                                                                                                                                                                                                                                                   >  1:823557/1‑304 (MQ=255)                tttCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GG‑‑‑TT‑TTTTTGG‑TCTTTAG‑T‑‑GTGc                                                                                                                                                                                                                                                                      >  1:823559/1‑291 (MQ=255)                     tGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑Gttttttggtctttagtgtgcggttgaggccgaa                                                                                                                                                                                                                                                                   <  1:823555‑M1/299‑34 (MQ=255)                      gTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGCAAAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACT‑ATGG‑TTTTAAAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GG‑‑‑TT‑TTTTTGG‑TCTTTAG‑TTAGTGCGGTTGA‑GGCCGAAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACG‑‑AACG‑TCAGTAATg‑ccagcca                                                                                                                                                                            >  1:86824/1‑374 (MQ=255)                                                       aaCGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGCAAAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGC‑‑GG‑‑TGT‑TTTTTGG‑TCtt                                                                                                                                                                                                                                                                                 <  1:823564/246‑1 (MQ=255)                                                             aaGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTGG‑TCTTTAGTT‑‑GTGCGGTTGATGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGAccc                                                                                                                                                                                                                 >  1:823570/1‑301 (MQ=255)                                                                            tCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCGTGttttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacg                                                                                                                                                                                                                <  1:823566‑M1/294‑85 (MQ=255)                                                                               aaaGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTC‑AAACCCGCTTAATCAGC‑‑Gtttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgtt                                                                                                                                                                                                         <  1:823567‑M1/295‑92 (MQ=255)                                                                                              aTTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGt                                                                                                                                                                                                                                                                   >  1:823575/1‑218 (MQ=255)                                                                                                 aCTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATgg                                                                                                                                                                                                                           >  1:823577/1‑253 (MQ=255)                                                                                                       gAAGACGGCAGCAAAAGACGTGTTTCGTACACTTTCTCTGCAATCCAGACTAATGGTTTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAAGGACCCTTCTGCTGC‑AAACG‑AATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGC‑‑GG‑‑TGT‑TTTTTTG‑TCTTTAG‑T‑‑GTGCGGtt                                                                                                                                                                                                                                                                  <  1:86833/214‑1 (MQ=255)                                                                                                                    aaaGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GG‑‑‑TT‑TTTTTGG‑TCTTTAg‑t                                                                                                                                                                                                                                                                            >  1:823579/1‑188 (MQ=255)                                                                                                                          gtg‑tTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTC‑AAACCCGCTTAATCAGCG‑Gtttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaa                                                                                                                                                                    <  1:823576‑M1/292‑129 (MQ=255)                                                                                                                                         tctcTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGC‑‑GG‑‑TGT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGt                                                                                                                                                                                                                                <  1:823578/210‑1 (MQ=255)                                                                                                                                                    cAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCGTGttttttggtctttagtgtgcggttgaggccgaaaacagccagaatgcc                                                                                                                                                                                                                                                    <  1:823580‑M1/191‑49 (MQ=255)                                                                                                                                                                  tt‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTTG‑GCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCa                                                                                                                                                                                >  1:823586/1‑234 (MQ=255)                                                                                                                                                                            ttGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GGT‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCggtggt                                                                                            >  1:823587/1‑311 (MQ=255)                                                                                                                                                                                     gTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCGTGtttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaaacaccacttctgccgaaaatgttgagaaggttgttagaccgccacaaaatccggtggtgattaa                                                                                                   <  1:823583‑M1/303‑194 (MQ=255)                                                                                                                                                                                      tCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGCAAAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCGTGttttttggtctttagtgtgcggttgaggccgaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaa                                                                                                                                                                    <  1:823585‑M1/239‑129 (MQ=255)                                                                                                                                                                                                   ttCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAA‑CCGCTTAATCAGCG‑GGT‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCAC‑TCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATAC‑TTCCACACTg                                                                        >  1:823590/1‑305 (MQ=255)                                                                                                                                                                                                    cgaatacactcaacggtgcc‑aaagG‑CCCTTCTGCTGCAAAACGTAATCGCTCTGTAAGATACGTCAAG‑CAAA‑G‑AATTC‑AAACCCGCTTAATCAGCG‑Gttgttggtcttagtgtgcggttgaggccgaaacagccagaatgccagtgcggtcatggcaaaagacccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaaacaaaaacaccacttctg                                                                                                                                                         <  1:86836‑M1/225‑140 (MQ=255)                                                                                                                                                                                                       aaaTCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑GAAATTCAAAA‑CCGCTTAATCAGCG‑GGTTTTT‑TTTTTGG‑TCTTTAGTT‑‑GTGCGGTTGA‑GGCCGAAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAgg                                                                                                                                                                                                          >  1:823592/1‑177 (MQ=255)                                                                                                                                                                                                       aaaTCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑Gttttttggtcttt                                                                                                                                                                                                                                                                                       <  1:823588‑M1/105‑14 (MQ=255)                                                                                                                                                                                                                aCGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GGT‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACtt                                                                                                                                             >  1:823594/1‑226 (MQ=255)                                                                                                                                                                                                                aCGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GGT‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGAcc                                                                                                              >  1:823593/1‑257 (MQ=255)                                                                                                                                                                                                                      cc‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTC‑AAACCCGCTTAATCAGCG‑Gtttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaa                                                                                                                                                                                                               <  1:823589‑M1/161‑86 (MQ=255)                                                                                                                                                                                                                                     tgctgc‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GG‑‑‑TT‑TTTTTGG‑TCTTAGT‑T‑‑GTGCGGTTGATGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGaa                                                                                                                                                                                                            >  1:86842/1‑143 (MQ=255)                                                                                                                                                                                                                                                        tctGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGC‑‑Gtgtttgtcttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaaagaccccagaaggttgacgaaaaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaacaccacttctgccgaaaatgttgagaaggttgttagaccgccacaaaatccggtggtgattaatactttccacactggatcaaatgttcgtcatc                                                                  <  1:86840‑M1/271‑227 (MQ=255)                                                                                                                                                                                                                                                            tAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAA‑‑CCGCTTAATCAGC‑‑Gtttttggtctttagtgtgcggttgaggccgaaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaaacaccacttctgccgaaaatgttgagaaggttgttagaccgccacaaaatccggtggtgattaatactttccacactggatcaatgttcgtcatcctgct                                                              <  1:823595‑M1/269‑231 (MQ=255)                                                                                                                                                                                                                                                              aGATACGTC‑AG‑C‑AA‑G‑AATTC‑AAACCCGCTTAATCAGCG‑Gtttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaacaccacttctgccgaaaatgttgag                                                                                                                                          <  1:823596‑M1/193‑155 (MQ=255)                                                                                                                                                                                                                                                              aGATACGTC‑AG‑C‑AA‑G‑AATTC‑AAACCCGCTTAATCAGCG‑Gtttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgac                                                                                                                                                                                                                  <  1:823597‑M1/121‑83 (MQ=255)                                                                                                                                                                                                                                                               gATACGTC‑AGTC‑AA‑C‑GATTCAAA‑‑CCGCTTAATCAGCG‑Gtttgttttgtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaaacaccacttctgccgaaaatgttgagaaggttgttagaccgccacaaaatccgg                                                                                                           <  1:86843‑M1/223‑186 (MQ=255)                                                                                                                                                                                                                                                                  aCGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑Ttttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtca                                                                                                                                                                                                                                           <  1:823598‑M1/93‑58 (MQ=255)                                                                                                                                                                                                                                                                     tC‑AG‑C‑AACG‑AATTCAAAA‑CCGCTTAATCAGCG‑GT‑‑TTG‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGtt                                                                                                                                                                                            <  1:823600/128‑1 (MQ=255)                                                                                                                                                                                                                                                                         g‑C‑AA‑G‑AATTCAAA‑‑CCGCTTAATCAGCG‑Gttgttgtcttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaagaccccagaaggttgacgaaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaaacaccacttctgccgaaaatgttgagaaggttgttagaccgccacaaaatccggtggtgattaatactttccac                                                                                          <  1:86845‑M1/230‑203 (MQ=255)                                                                                                                                                                                                                                                                                g‑AATTC‑AAACCCGCTTAATCAGCG‑Tgttttggtctttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaaagaccccagaaggttgacgaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaacaccacttctgccgaaaatgttgagaaggttgttagaccgccacaaaatccggtggtgattaatactttccacactggatcaatgttcgtcatcctgctgaaccatgc                                                      <  1:823599‑M1/263‑239 (MQ=255)                                                                                                                                                                                                                                                                                    ttCAAAACCCGCTTAATCAGC‑‑Gtgtttggtcttagtgtgcggttgaggccgaaaacagccagaatgccagtgcggtcatggcaaaaagaccccagaagttgacgaaaaacgttcagtaatgcccagccaaagcggccctcttgtaacaaaacaccacttctgccgaaaaatgttgagaaggttgttagaccgccacaaaatccggtggtgattaatactttccacactggatcaatgttcgtcatcctgctgaaccatgcgaatcctattcctatgatgaatgccccaatcaggtttgctgtcagcgtcccc  <  1:86844‑M1/312‑291 (MQ=255)                                                                                                                                                                                                                                                                                             cGCTTAATCAGCG‑GT‑‑TTTGTTTTTGGTTCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATc                                                                    <  1:823602/231‑1 (MQ=255)                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                   GCATTTGTGTCTATTTTTCATGTAAAGGTAATTTTGATGTCTAAGATTAAAGGTAACGTTAAGTGGTTTAATGAGTCCAAAGGATTCGGTTTCATTACTCCGGAAGACGGCAGC‑AAAGACGTG‑TTCGTACAC‑TTCTCTGCAATCCAGACTAATGG‑TTTT‑AAAACTCTTGCTGAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTC‑AG‑C‑AA‑G‑AATTCAAAACCCGCTTAATCAGCG‑GG‑‑TTT‑TTTTTGG‑TCTTTAG‑T‑‑GTGCGGTTGA‑GGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAGACCCCAGAAGGTTGACGAAAACGTTCAGTAATGCCCAGCCAAAGCGGCCCTCTTGTAACAAAAACACCACTTCTGCCGAAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTATGATGAATGCCCCAATCAGGTTTGC  >  NC_000913/657256‑657821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.