| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1124916 | 35 (0.580) | 17 (0.280) +AAA |
14/370 | 2.5 | 32.4% | coding (411/1209 nt) | mdtH | multidrug efflux pump MdtH |
| ? | NC_000913 | 1124917 = | 36 (0.580) | coding (410/1209 nt) | mdtH | multidrug efflux pump MdtH | |||||
TCGTTGACCATAATTGGCAGCATCAGCATCACTTGTACAG‑CCAGCATGTAGTAACCCGCCAGCGTCAGAACATAGGTGACAAAACGCTTGTCACGCATCACGCGGGTCATGCC‑TTCGCGAACGGGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTGAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1124617‑1124916‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTA > NC_000913/1124917‑1125166 |||||||||||| TCGTTGACCATAATT‑GCAGCATCAGCATCACTTGTACAG‑CCAGCATGTAGTAACCCGCCAGCGTCAGAACATAGGTGACAAAACGCTTGTCACGCATCACGCGGGTCATGCCTTTCGCGAACGGGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTGAACGCCGCACATAGCAC‑AATAGAACTGCCCCTGTCGGCGCAGACCGACGGCGGAAGTCGTATTGCAACAGCCAGCTCCCCAAC‑ATGCGCC‑ATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAcgaccacg > 1:136706/1‑303 ATCACTTGTACAGCCCAGCATGTAGTAACCCGCCAGCGTCAGAACATAGGTGACAAAACGCTTG‑CACGCATCACGCGGGTCATGCC‑TTCGCGAACGGGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTGAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCAC < 1:136708/381‑1 CGCATCACGCGGGTCATGCCTTTCGCGAACGGGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTGAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATCAAACAGCGAGA‑‑‑‑‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGC < 1:136715/267‑1 CGGGTCATGCC‑TTCGCGAACGGGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTGAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑‑AAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AA < 1:136716/268‑1 GGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTG‑ACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAACAAACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAG < 1:136721/341‑1 GAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAA < 1:890318/134‑1 GAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTA‑TGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAGAAAAAAAAAAAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATTAAATTTCACCACCAGCGCCGAACGCGGCGGATCAAACAAACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCATCCAGCATACCCGGTAAACAAATCATCGGTTTGGCACCA < 1:136723/339‑1 GT‑GGCGCAGACC‑A‑GGCG‑AAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAGAAAAA‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCG < 1:890320/300‑1 AGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAAAAAACACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGGTTTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCAT > 1:136728/1‑261 GCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAAAAAC‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCG > 1:136730/1‑272 TCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑AAAAAAAA‑ACGACCAACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGC < 1:890334/263‑1 TGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑‑AAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCG < 1:890330/296‑1 CGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAGAA‑‑‑‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTA < 1:890332/299‑1 CCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAGA‑‑‑‑‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAACAAACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGC < 1:890335/187‑1 AATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑‑AAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCA‑TGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGC < 1:136731/244‑1 CACTGTCCTGCATCAATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑‑AAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGC < 1:136736/154‑1 ATC‑AACAGCGAGA‑‑‑‑‑‑‑‑AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACC < 1:890340/240‑1 AAAAAAAA‑ACGACC‑ACGCTGCTGTGGACGGA‑T‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAA < 1:890351/243‑1 |||||||||||| TCGTTGACCATAATTGGCAGCATCAGCATCACTTGTACAG‑CCAGCATGTAGTAACCCGCCAGCGTCAGAACATAGGTGACAAAACGCTTGTCACGCATCACGCGGGTCATGCC‑TTCGCGAACGGGCGTGCGTACGGTGGAGAGTTTCCATGCTGGTAACAACCACGCATTGAACGCCGCACATAGCACAAATAGAACTGCCCCTGT‑GGCGCAGACC‑A‑GGCGAAAGTCGTATTGCAACAGCCAGCTCCCCAACAATGCGCCAATGACCGCACCGGCACTGTCCTGCATC‑ATC‑AACAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1124617‑1124916‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAA‑ACGACC‑ACGCTGCTGTGGACGGATT‑AATTTCACCACCAGCGCCGAACGCGGCGGATCAAAC‑AACGTGCCACCGAGTCCCGAGAGCAGGCATGAAAACCACAATAGCCACGG‑TTCGTGGGCGATACCCATTGTGGCGAATCCGGCGGCGCGCAT‑CAGCATA‑CCGGT‑AAC‑AATCATCGGTTTGGCACCAAAGCGGTCGGCAATTGCACCGCCGAAAATACCCAGACCTTGCTGAATAAATTGGCGTA > NC_000913/1124917‑1125166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |