| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,980,730 | Δ3 bp | intergenic (‑95/+32) | ygeA ← / ← araE | amino acid racemase/arabinose:H(+) symporter |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2980729 | NA (NA) | 19 (0.310) | 16/388 | 2.3 | NA | intergenic (‑94/+35) | ygeA/araE | amino acid racemase/arabinose:H(+) symporter |
| ? | NC_000913 | 2980733 = | NA (NA) | intergenic (‑98/+31) | ygeA/araE | amino acid racemase/arabinose:H(+) symporter | |||||
AGCCAAGCGCCGCCTCAGCCAGAATGTCCCCGGTTTTATCCCATTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2980425‑2980729‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACC > NC_000913/2980733‑2980968 AGCCAAGCGCCGCCTCAGCCAGAATGTCCCCGGTTTTATCCCATTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCCAAGCTCATTCCTCCCAGC‑AAACC‑AATTTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCCAAAGTG‑CCCAATCTCTATTAACGA‑AAGG‑‑A‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGT > 1:503181/1‑403 AGCCAGAATGTCCCCGGTTTTATCCCATTCCCCGCGACGCTGGCACTCTTCTA‑TTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAGTTGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑G‑‑A‑G‑CCGGATGTACAGCACATCCGGCCCG > 1:503182/1‑315 CCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAAT‑AGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATT‑ACGA‑AAGG‑‑A‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAG‑CGCCGATA‑TTTCTCAAC‑TCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA > 1:503188/1‑355 TATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑AGG‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTT > 1:1380407/1‑286 TTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑AGGA‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA > 1:503193/1‑336 TGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACG‑TAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTT‑CCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑G‑CCGGATGTACAGCACATCGGCCCCGTGAAATCAGACGCCGATATTTTCTCAACTTCTCGCCTGCC‑TCAG‑‑TTGCGTTTCGATATGTTCCAGCGT > 1:1380413/1‑296 AAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCCAAAGTG‑CCCAATCTCTATTAACGA‑AA‑AGGA‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGAGCCAGA > 1:503196/1‑319 CAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACG‑TAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑AGGA‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAGTTTTGCG‑TTCGATATGTTC > 1:503198/1‑275 AAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACCAAA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑AGGA‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGAGCCAGAAAGTA > 1:503199/1‑315 AAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑‑TTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑G‑CCGGATGTACAGCACAT‑CGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCGTTTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTT > 1:1380415/1‑290 gttttaAATGCCTTCATTTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAGAACAAACGCCTCAACGGCC‑AAGTGCCCCAATCTCTATTAACGA‑AAGA‑‑G‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACAT‑TTTTTGGTTTCCGGAATGAGCCAG‑AAGTAATGCCCAC‑AACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGC > 1:503201/7‑364 CA‑TTTATCAAACG‑TAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTGTTTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAAT‑AGGAACGAG‑AC‑AACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AG‑G‑‑A‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATG > 1:503202/1‑278 AACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGCAAAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑AGG‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGA > 1:1380422/1‑253 CCTCCCAGC‑AAACC‑AA‑TTG‑‑TTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑G‑GCGGATGTACAGCAC‑TC‑‑GCCCGTG‑AATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TT‑‑CG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGG‑TTCCGGAATGAGCCAGAAAGTAATGC > 1:1380425/1‑244 TTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑‑TTGCG‑TTCGATATGTTCCAGCGTGACAATTTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATA > 1:1380428/1‑297 AAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑G‑GC‑GATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑‑TTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACC > 1:1380431/1‑299 TAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑G‑GACCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAGTTTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGTGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAAT > 1:1380438/1‑245 CTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑AGGA‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCC > 1:503212/1‑172 GGCC‑AAGTG‑CCCAATCTCTATTAACGAGGC‑G‑‑A‑G‑GCTGGTG‑ACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACAT‑TTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCAC‑AACGCAATGTT > 1:503213/1‑179 AGCCAAGCGCCGCCTCAGCCAGAATGTCCCCGGTTTTATCCCATTCCCCGCGACGCTGGCACTCTTCTATTTCATGAAAATCGACGCTATGTAGCAGCACTTGCGCAGAG‑TGAAGCCCACCAAGCCGCTGTTTAATGCCTTCA‑TTTATCAAACGATAGTAAGGAATGGTGGATTCCC‑AGCTCATTCCTCCCAGC‑AAACC‑AA‑TTG‑TTTTCATTCCTCTCTCCTGATGTGTGTTACCGCAACAAGGCTGAATAAGGAACGAG‑ACAAACGCCTCAACGGCC‑AAGTG‑CCCAATCTCTATTAACGA‑AA‑A‑‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2980425‑2980729‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑G‑CCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATA‑TTTCTCAACTTCTCGCCTGCCATCAG‑TTTGCG‑TTCGATATGTTCCAGCGTGACA‑‑TTTTTGGTTTCCGGAATGAGCCAGAAAGTAATGCCCACAAACGCAATGTTCAGCGCAGTGTAGAGCCAGAACGTACCGGCAGCGCCAATGCTATCAAGCAGTGTCAGGAAGGTCGCGCCGATAATCATATTCGACACC > NC_000913/2980733‑2980968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |