New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 657539	31 (0.680)	16 (0.350)	13/374	2.7	34.4%	intergenic (+38/+16)	cspE/crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
	?	NC_000913	657543 =	30 (0.660)					intergenic (+42/+12)	cspE/crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel

TCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAAT‑GGTTTTAAAACT‑CTTG‑‑CTG‑AAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/657341‑657539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATG‑CCCAGCCAAAGCGG‑CCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTAT  >  NC_000913/657543‑657797                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAAT‑GGTTTTAAAACT‑CTTG‑‑CTG‑AAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAA‑‑CCGCTTAATCAGC‑G‑T‑‑GTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAG                                                                                                                                                                                          <  1:52344/272‑1                  GAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAAT‑GGTTTTAAAACT‑CTTG‑‑CTG‑AAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑TGGTTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AA                                                                                                                                                                                                                                     <  1:52345/218‑1                                     aGTTCGTACACTTCTCTGCAATCCAGACTAAT‑GGTTTTAAAACT‑CTTG‑‑CTG‑AAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGGCCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGG‑T‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCC                                                                                                                                                                                            <  1:435293/237‑1                                                     TGCAATCCAGACTAATAGGTTTTAAAACTACTTGTACTG‑AAGGTCAGCGCGTAGAGTTCG‑AATCACTAACGGTGCC‑AAAGGCCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGG‑T‑‑TTTTTTGGTCTTTAGTGTGCGGT                                                                                                                                                                                                                                                <  1:435295/176‑1                                                                                   CTTG‑‑CTGAAAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCCAAAAGG‑CCCTTCTGCTGCAAAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑T‑‑GTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAAGA‑CCCCAGAAGGTTGACGAAAAACGTTCAGTAATG‑CCCAGCCAA                                                                                                                                                     <  1:1062789/234‑1                                                                                                 TCAGCGCGTAGAGTTCG‑AATCACTAACGGTGCCAAAAGGCCCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGG‑T‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATGCCCCAGCCAAAGCGG‑CCCTCTTGTAACAAA                                                                                                                                <  1:435302/241‑1                                                                                                            AGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑GAG‑‑TTTTTTGGTCTTT                                                                                                                                                                                                                                                          <  1:1069188/112‑1                                                                                                                                              TCTGCTGC‑‑AACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑G‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATGCCCCAGCCAAAGCGG‑CCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCA                                                     <  1:435305/269‑1                                                                                                                                                               TCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGG‑T‑‑TTTTTTGGTCTTT                                                                                                                                                                                                                                                          <  1:435307/64‑1                                                                                                                                                                CGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑G‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGG‑CG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGACCCCCAGAAGGTTGACG‑AAAACGTTCAGTAATGCCCCAGCCAAAGCGGCCCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTAT  <  1:435309/305‑1                                                                                                                                                                 GCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGG‑T‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATGCCCCAGCCAAAGCGG‑CCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATT                                                                <  1:435311/242‑1                                                                                                                                                                  CTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGCGG‑T‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATG‑CCCAGCCAAAGCGGCCCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCA                                                     <  1:435310/252‑1                                                                                                                                                                       TAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑T‑‑GTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAAGA‑CCCCAGAAGGTTGACGAAAAACGTTCAGTAATG‑CCCAGCCAAAGCGG‑CCCTCTTGTAACAAAAACACCACTTCTGCCGAAAAATGTTGA                                                                                                     <  1:1257890/200‑1                                                                                                                                                                                 CAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑G‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATGCCCCAGCCAAAGCGGCCCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTA   <  1:435316/287‑1                                                                                                                                                                                        AATTCAAAACCCGCTTAATCAGC‑G‑T‑‑GGTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATG‑CCCAGCCAAAGCGG‑CCCTCTTGTAAC‑AAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGT                                                                    <  1:52351/212‑1                                                                                                                                                                                                            AGC‑G‑T‑‑GTTTTTGGTCTTTAGTGTGCGGTTGAGGCCGAAAAACAGCCAGAATGCCAGTGCGGTCATGGCAAAAAGA‑CCCCAGAAGGTTGACGAAAAACGTTCAGTAATG‑CCCAGCCAAAGCGG‑CCCTCTTGTAACAAAAACACCACTTCTGCCGAAAAATGTTGA                                                                                                     <  1:1050786/164‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCGGTTTCATTACTCCGGAAGACGGCAGCAAAGACGTGTTCGTACACTTCTCTGCAATCCAGACTAAT‑GGTTTTAAAACT‑CTTG‑‑CTG‑AAGGTCAGCGCGTAGAGTTCGAAATCACTAACGGTGCC‑AAAGG‑CCCTTCTGCTGC‑AAACGTAATCGCTCTGTAAGATACGTCAGCAAGAATTCAAAACCCGCTTAATCAGC‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/657341‑657539 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑T‑‑TTTTTTGGTCTTTAGTGTGCGGTTGAGGCCG‑AAAACAGCCAGAATGCCAGTGCGGTCATGGC‑AAAAGA‑CCCCAGAAGGTTGACG‑AAAACGTTCAGTAATG‑CCCAGCCAAAGCGG‑CCCTCTTGTAACAAAAACACCACTTCTGCCG‑AAAATGTTGAGAAGGTTGTTAGACCGCCACAAAATCCGGTGGTGATTAATACTTTCCACACTGGATCAATGTTCGTCATCCTGCTGAACCATGCGAATCCTATTCCTAT  >  NC_000913/657543‑657797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.