| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 17 (0.370) | 21 (0.510) | 18/342 | 1.4 | 55.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 18 (0.430) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
GCGCTGACATTGTCATAATTTGCAACAACGGCAACACAGGCATTATTAAACGCAACCGGGAATACAACTGTA‑TTTCCAT‑CCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1208021‑1207790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAGACAAGATAAGCGGCACAAAGTCCG‑AAAGGCCGGGACTGAAAAAACTGCT > NC_000913/1209619‑1209830 GCGCTGACATTGTCATAATTTGCAACAACGGCAACACAGGCATTATTAAACGCAACCGGGAATACAACTGTA‑TTTCCAT‑‑CCCCCCAGAGGCAGATGCTTTTGCGGCATTCCA‑CCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACG‑TTATG‑AAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑G > 1:89146/1‑283 GTCATAATTTGCAACAACGGCAACACAGGCATTATTAAACGCAACCGGGAATACAACTGTA‑TTTCCAT‑‑CCCCCCAGAGGCAGATGC‑TTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCC‑TTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGC‑AATGGCATCATTCCTGCTTTTACCA‑‑GGGGATTTAACATGCTTATT‑GGCTATGTACGCtgtat > 1:502914/1‑303 ACACAGGCATTATTAAACGCAACCGGGAATACAACTGTA‑TTTCCATCCCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACC‑ACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAG < 1:89267/304‑1 GGAATACAACTGTA‑TTTCCAT‑CCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACC > 1:502912/1‑227 ACAACTGTA‑TTTCCAT‑CCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACG < 1:89270/291‑1 CAACTGTATTTTCCAT‑CCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑‑GGGGATTTAACATGCTTATTGGGCTATGTAC > 1:502916/1‑254 CAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACC > 1:1105008/1‑145 GCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACC‑GTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTT > 1:1008873/1‑117 ATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAACAAAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAAGGCCGGGACTGAAAA < 1:89268/317‑1 ATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTCCTCCTTCTatta < 1:502918/100‑5 TGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGC > 1:89145/1‑248 TCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCC‑AACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACC < 1:503129/196‑1 ACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTCTCGGCGATGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGG > 1:502913/1‑123 AATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGA < 1:89139/101‑1 ATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑A‑TTTTGAAGACAAGATAAG > 1:503125/1‑251 ATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACG > 1:502915/1‑165 ATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATG‑AAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGAC > 1:89144/1‑180 AACCGGTATAGCTATGAAACC‑GTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTTGCTCCTTCTCCCAAACCAACGTTTATG‑AAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGAT > 1:1183275/1‑137 gtaATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGT < 1:985787/193‑1 GTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AATAACAAGC‑AATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAG‑ACACAGATCT‑ACAACGTAATGCGCTGAAACTGTGGCAGGATGCGAGCTG‑A‑TTTTGAAGACAAGATAAGCGGCACAAAGTCCG‑AAAGGCCGGGACTGAAAA < 1:89266/275‑1 GCTATGAAACC‑GTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTTGCTCCTTCTCCCAAACCAACGTTTATG‑AAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAG > 1:1135473/1‑229 TGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAAGGCCGGGACTGAAAAAACTGCT < 1:503127/276‑1 GTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAGACAAGA < 1:89271/220‑1 TTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTGAATTTTTGAAGACAAGATAAGCGGCACAAAGTCCG < 1:89269/224‑1 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCTAACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAGACAAGATA < 1:1241628/188‑1 GCGCTGACATTGTCATAATTTGCAACAACGGCAACACAGGCATTATTAAACGCAACCGGGAATACAACTGTA‑TTTCCAT‑CCCCCCCAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAG‑TTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1208021‑1207790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATT‑GGCTATGTACGCGTATCAAC‑AAATGACCAGAACACAGATCT‑ACAACGTAATGCGCTG‑AACTGT‑GCAGGATGCGAGCTG‑ATTTTTGAAGACAAGATAAGCGGCACAAAGTCCG‑AAAGGCCGGGACTGAAAAAACTGCT > NC_000913/1209619‑1209830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |