New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =17 (0.370)21 (0.510) 18/342 1.4 55.6% coding (290/630 nt) ycfK e14 prophage; protein StfP
?NC_000913 1209619 = 18 (0.430)pseudogene (37/537 nt) stfE e14 prophage; putative side tail fiber protein fragment

GTATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCAG  >  NC_000913/1207508‑1208083
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                                       
gTATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGATCCGTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                                                                                                                                                                                                                                              >  1:89123‑M1/1‑296 (MQ=255)
      acacGAAAACCGCGCAGAAGGATAAAGTTCGGCGCGGGTAAGAACCGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAAACGGCTCTCGAAAACCTTGGTTTGGG                                                                                                                                                                                                                                                                                                             <  1:89122‑M1/288‑1 (MQ=255)
                    cAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg                                                                                                                                                                                                                                                                            >  1:978187‑M1/1‑277 (MQ=255)
                     aGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCATCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatt                                                                                                                                                                                                                                                                                             <  1:502883‑M1/287‑10 (MQ=255)
                            tAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTTGGCGATATCAAATCGGATCGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgt                                                                                                                                                                                                                                                                                 >  1:502884‑M1/1‑274 (MQ=255)
                                                                   aaCCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTGGGAGAAGGctctgcattacctgttggtgtcc                                                                                                                                                                                                                                                                               >  1:502887‑M1/1‑233 (MQ=255)
                                                                          aGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtc                                                                                                                                                                                                                                                                                >  1:89127‑M1/1‑226 (MQ=255)
                                                                              cGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgtcccgg                                                                                                                                                                                                                                                                            >  1:502888‑M1/1‑221 (MQ=255)
                                                                               ggCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCAGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGc                                                                                                                                                                                                              <  1:89126/299‑1 (MQ=255)
                                                                                   cGCCTGCCACCGATCTGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaag                                                                                                                                                                                                       <  1:1019810‑M1/311‑96 (MQ=255)
                                                                                   agcagttttttcagtcccggccttttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa                                                                                                                                                                                                                                                <  1:503127‑M1/63‑1 (MQ=255)
                                                                                      cTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttgg                                                                                                                                                                                                                                                                                    >  1:1063057‑M1/1‑212 (MQ=255)
                                                                                        ttttcagtcccggccttttcggactttgtgccgcttatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcattttgttgatacgcgtacatagccaataagcatgttaaatcccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAt                                                                                                                                                                                                 <  1:89268‑M1/109‑1 (MQ=255)
                                                                                          cACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctg                                                                                                                                                                                                          <  1:1141963‑M1/301‑93 (MQ=255)
                                                                                             ttttcagtcccggcctttcggactttgtgccgcttatcttgtcttcaaaatcagctcgcatcctgccacagtttcagcgcattacgttgtagatctgtgtctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccattgcttgttattcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAc                                                                                                                                                                                                                                       <  1:89266‑M1/72‑1 (MQ=255)
                                                                                                     atgatgACTACTTTGACATGTTGCAGGAGGAACTTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgtcc                                                                                                                                                                                                                                                                               >  1:502890‑M1/1‑201 (MQ=255)
                                                                                                      tgatgaCTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctg                                                                                                                                                                                                                                      <  1:89128‑M1/262‑65 (MQ=255)
                                                                                                          gaCTACTTTGACATGTTGCAGGAGGAACTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa                                                                                                                                                                                                                                                                      >  1:502891/1‑222 (MQ=255)
                                                                                                            cggactttgtgccgcttatcttgtcttcaaaaattcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                                                                                                                                                                                               <  1:89269‑M1/36‑1 (MQ=255)
                                                                                                                 tttGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT                                                                                                                                                                                                                                                                                                                   >  1:502892‑M1/1‑177 (MQ=255)
                                                                                                                  ttGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccccggttccgtggc                                                                                                                                                                                                                                                                  >  1:89129‑M1/1‑187 (MQ=255)
                                                                                                                  ttGACATGTTGCAGGAGGAACTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTAtt                                                                                                                                                                                                                  >  1:502893/1‑263 (MQ=255)
                                                                                                                            tatcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgttagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg                                                                                                                                                                                                                                                                                                      <  1:1241628‑M1/16‑1 (MQ=255)
                                                                                                                            gCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAG                                                                                                                                                                                                                                                                                                       >  1:502894‑M1/1‑176 (MQ=255)
                                                                                                                            cttatcttgtcttcaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                                                >  1:503125‑M1/173‑251 (MQ=255)
                                                                                                                               tcttgtcttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                                                                                                                                                                               <  1:89271‑M1/51‑1 (MQ=255)
                                                                                                                                   gaACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga                                                                                                                                                                                                                                     <  1:89131‑M1/235‑66 (MQ=255)
                                                                                                                                      cttcaaaaatcagctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatttcataaacgTTGGTTTGGGAGAAGGAGCAAAAACTCAATGCAGCAACGGCTACATTAGGACGCACGGTTTCATAGc                                                                                                                                                                                                                                            >  1:1135473‑M1/163‑229 (MQ=255)
                                                                                                                                                 gctcgcatcctgcacagttcagcgcattacgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCa                                                                                                                                                                                                             >  1:89145‑M1/152‑248 (MQ=255)
                                                                                                                                                                     aGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGTCGATATCAATCGGATGGCACTGTGCAAACAGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTATCATTAGGACGCAACCGGTTTCAATAGCTATACCGGTTATGATTGGTGGTAATTGAGCAATCAGTAATCATTCAg                                                                                                                                                                                             <  1:502895/239‑1 (MQ=25)
                                                                                                                                                                      gCCTGGAGAAGGGCGGCACGACCAGTTACTTACCGCACTTCGTCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAAGAAGGctctgcattacctgttggtgtccccggttccgtggccttcagccaactccgccaacaggctggctgaaaatgcaatggtgccgctttttctgctgaagaatacccggaactggca                                                                                                                                                                                   <  1:503120‑M1/251‑116 (MQ=255)
                                                                                                                                                                         tGGAGAAGGGGCGGCGACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataa                                                                                                                                                                 <  1:503118‑M1/267‑134 (MQ=255)
                                                                                                                                                                             acgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATagctattac                                                                                                                                                                                                                                      <  1:985787‑M1/73‑4 (MQ=255)
                                                                                                                                                                              cgttgtagatctgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGt                                                                                                                               <  1:89270‑M1/169‑1 (MQ=255)
                                                                                                                                                                              aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc                                                                                                                                                                                                                                                            <  1:502896‑M1/170‑43 (MQ=255)
                                                                                                                                                                              aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                                                <  1:89133/191‑1 (MQ=255)
                                                                                                                                                                              aaGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                                                <  1:89134/191‑1 (MQ=255)
                                                                                                                                                                                       cACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctga                                                                                                                                                                                                                                     <  1:503123‑M1/184‑66 (MQ=255)
                                                                                                                                                                                               ctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTgtgt                                                                                                 <  1:89267‑M1/199‑1 (MQ=255)
                                                                                                                                                                                                 ggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                                                                                                                                                                                                <  1:503129‑M1/93‑1 (MQ=255)
                                                                                                                                                                                                   gtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                                                >  1:89144‑M1/102‑180 (MQ=255)
                                                                                                                                                                                                   acttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttat                                                                                                                                       >  1:502899‑M1/1‑110 (MQ=255)
                                                                                                                                                                                                        ccGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGAATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                                                <  1:1245345/167‑1 (MQ=255)
                                                                                                                                                                                                         cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGGCAAACGGCTCATCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCctc                                                                                                                                                          <  1:1189731/233‑1 (MQ=255)
                                                                                                                                                                                                         cGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctg                                                                                                                                                                                                          <  1:1166945‑M1/195‑93 (MQ=255)
                                                                                                                                                                                                            aCTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGc                                                                                                                                                                    <  1:502898/218‑1 (MQ=255)
                                                                                                                                                                                                             cTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccccggttccgtggccttcagccactccgccaacaggctggctgaaaatgcaatggtgccgctttttctgctgaagaataccccggaactggcaaggcttatccgacaaataattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagta                                                                                 <  1:503105‑M1/310‑214 (MQ=255)
                                                                                                                                                                                                              atacagcgtacatagccaataagcatgttaaatcccctggtaaaagcaggaatgatgccattgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAGCATCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGAc                                                                           >  1:502914‑M1/91‑308 (MQ=255)
                                                                                                                                                                                                                cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccgga                                                                                                                                                                                             >  1:502902‑M1/1‑97 (MQ=255)
                                                                                                                                                                                                                cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagttt                                                                                                                                         >  1:971938‑M1/1‑94 (MQ=255)
                                                                                                                                                                                                                  cgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTAt                                                                                                                                                                                                                                >  1:502915‑M1/87‑165 (MQ=255)
                                                                                                                                                                                                                   gtacatagcccaataagcatgttaaatcccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAAATACAGTTg                                                                                                                                >  1:502916‑M1/86‑254 (MQ=255)
                                                                                                                                                                                                                          ctgTTAAGCCGCAAGAATCCGTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCAcc                                                             >  1:502903/1‑307 (MQ=255)
                                                                                                                                                                                                                             ttAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtccccggttccgtggcctttcagccactccgccaacaggctggctgaaatgca                                                                                                                                                                                                                             >  1:89135‑M1/1‑82 (MQ=255)
                                                                                                                                                                                                                                           tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGATGCCGCAAAGCATCTGCCTCTggggg                                                                                                                                                   >  1:973867/1‑202 (MQ=255)
                                                                                                                                                                                                                                            atccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcatttcataaacgTTGGTTTGGGAGAAGGAGCAAAAACTCAATGCAGCAACGGCTACATTAGGACGCACGGTTTCATAGCTATACCGGtt                                                                                                                                                                                                                                  >  1:1183275‑M1/61‑137 (MQ=255)
                                                                                                                                                                                                                                                tttGGCGATATCAAATCGGATGGCACTGTGCAAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGGTGGAAATGCCGCAAAAGCATCTGGCCTCTGGGGGGGGATGGaa                                                                                                                                          <  1:1111647/214‑1 (MQ=38)
                                                                                                                                                                                                                                                  tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgttggccttcagcctactccgccaacaggctggctgaatgacatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtg                                                                                                                                                >  1:1247253‑M1/1‑63 (MQ=255)
                                                                                                                                                                                                                                                   ggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTcc                                                                                                                          >  1:502912‑M1/54‑227 (MQ=255)
                                                                                                                                                                                                                                                   ctggtaaaagcaggaatgatgccatttgcttgttatttcttcatttcataacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAgcgc                                                                >  1:89146‑M1/54‑283 (MQ=255)
                                                                                                                                                                                                                                                              aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgcttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgattacgtggtgagttttattcgtggctggggatgacgggcgggggattgatacaggtgctc                                                                                              >  1:503103‑M1/1‑54 (MQ=255)
                                                                                                                                                                                                                                                                   ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatcccgacaaataa                                                                                                                                                                 >  1:503117‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                                                                                      tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgaacaaataaattgcctgatttacgtggtgagttta                                                                                                                                       <  1:1241254‑M1/204‑160 (MQ=255)
                                                                                                                                                                                                                                                                      ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCATCGCCGAGACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTggtggt                                                                                                                                                                                                                      >  1:502913‑M1/35‑123 (MQ=255)
                                                                                                                                                                                                                                                                              gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgc                                                                                                                                                                                                                                >  1:89261‑M1/1‑38 (MQ=255)
                                                                                                                                                                                                                                                                               tgtgtcaacggctcTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccccggttccgtggccttcagccactccgccaacaggctggctgaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattga                                                                                                         <  1:503108‑M1/222‑190 (MQ=255)
                                                                                                                                                                                                                                                                               tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCg                                                                                            >  1:89138/1‑225 (MQ=255)
                                                                                                                                                                                                                                                                                 gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcc                                                                                                                                                                                                                                                                  >  1:89264‑M1/1‑36 (MQ=255)
                                                                                                                                                                                                                                                                                      tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt                                                                                                                                                                                                                            <  1:89139‑M1/83‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      aCGGCTCTCGAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggc                                                                                                                                                                                                                                        >  1:1197636‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                                                                                                       cttcattttcataaaCGTTGGTTTTGGGAGAAGGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCAg  >  1:502908/13‑311 (MQ=255)
                                                                                                                                                                                                                                                                                       cGGCTCTCGAAAACCTTGGTTTGGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgattacgtggtgagtttattcgtggctggggatgacggggcgggggattgatacaggtcgctctattttaa                                                                                    >  1:503102‑M1/1‑32 (MQ=255)
                                                                                                                                                                                                                                                                                       cGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtgg                                                                                                                                 >  1:503110‑M1/1‑31 (MQ=255)
                                                                                                                                                                                                                                                                                                 gAAAACCTTGGTTTTGGGAGAAGGctctgtcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaact                                                                                                                                                                                         >  1:1072365‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                                                                                                 gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggattgatacaggtcgctctattttaagtattcaggggtatgcaacggaggatcatgctcatggattaccgtcaagatccacgattgtgactgatgcaatc           >  1:503089‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                                                                                 gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg                                                                                                                                                                                                                                                                            >  1:1152499‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                                                                                 gAAAACCTTGGTTTGGGAGAAGGAGCAAGTAACAATGCAGCAACGGCTACATTAGGACGCACGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCa   >  1:89142/1‑299 (MQ=255)
                                                                                                                                                                                                                                                                                                 gAAAACCTTGGTTTGGGAGAAGGAGCAAGA‑‑CAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCa   >  1:89141/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                                                    aaCGTTGGTTTGGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTg                                                >  1:502909/1‑252 (MQ=255)
                                                                                                                                                                                                                                                                                                       cTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaacaggctggctgaaatgcaaggtgccgcttt                                                                                                                                                                                                                  <  1:1104803‑M1/101‑85 (MQ=255)
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                                       
GTATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCAG  >  NC_000913/1207508‑1208083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.