New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1821865	14 (0.310)	17 (0.370)	16/374	2.0	54.0%	intergenic (‑246/+53)	chbB/osmE	N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component/osmotically‑inducible lipoprotein OsmE
	?	NC_000913	1821869 =	15 (0.330)					intergenic (‑250/+49)	chbB/osmE	N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component/osmotically‑inducible lipoprotein OsmE

GCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGCCAGACACTCCGCAAGCCTTAACCTGCTTCCATGCTCT‑GGGTAACTTGCGAAACCAACATGAC‑‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTTGATGACATGTCC‑GGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGA‑CCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTA‑CCCGCAATTTGTGCAACCTGCGCCCGGCTCATGCCTTTTTTGACGTCTTTCACCACAGGCTGTACAA  >  NC_000913/1821546‑1822165                                                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                                     gcgcgcATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGCCAGACACTCCGCAAGCCTTAACCTGCTTCCATGCTCT‑GGGTAACTTGCGAAACCAACATGAC‑‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑‑TTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACATTTTCGGGGCAAATAATTCGCGAAGCATAATTAAGAACTCAGGCC‑AAAAAAcggcgcaatggccggtttc                                                                                                                                                                                                                                                                                                   >  1:579059‑M1/1‑322 (MQ=255)                                                                                                            aGACACTCCGCAAGCCTTAACCTGCTTCCATGCTCT‑GGGTAACTTGCGAAACCAACATGACT‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattg                                                                                                                                                                                                                                                                      >  1:579076‑M1/1‑215 (MQ=255)                                                                                                                              aaCCTGCTTCCATGCTCT‑GGGTAACTTGCGAAACCAACATGACTTTTTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggttccgttgttactcaagcttcagacgaattgattact                                                                                                                                                                                                                                                                  >  1:579078‑M1/1‑199 (MQ=255)                                                                                                                                           gCTCTGGGGTAACTTGCGAAACCAACATGACT‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑‑TTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTCGGGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑‑AAAAAAACCGGCGCAATGGCCGG‑TTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTTGATGACATGTCCGGGTATCATCTAACGCGACAAAGTAGG‑TTCTGCTTTACCATCACGTTGA‑CCCAGGATGTA‑GTCTGGc                                                                                                                  >  1:579079/1‑370 (MQ=255)                                                                                                                                           gCTCTGGGGTAACTTGCGAAACCAACATGAC‑‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑‑TTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTCG‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGgcgc                                                                                                                                                                                                                                                                                                             >  1:579080/1‑191 (MQ=255)                                                                                                                                                                      tGAC‑‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTC‑GACG‑CAAAACcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcc                                                                                                                                                                                                                                                        <  1:131109‑M1/217‑63 (MQ=255)                                                                                                                                                                          tgacttttttgtggCTG‑AAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCA‑GCC‑‑AAAACcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcc                                                                                                                                                                                                                                                        <  1:131108‑M1/210‑63 (MQ=255)                                                                                                                                                                                           aaaGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑‑AAAAAcggcgcaatggccggtttccgttgttactcaagcttcagacgaattgat                                                                                                                                                                                                                                                                     >  1:131110‑M1/1‑137 (MQ=255)                                                                                                                                                                                                   ataCGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTAT‑AATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑‑AAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATc                                                                                                                                                                                                                                          <  1:579081/201‑1 (MQ=255)                                                                                                                                                                                                    taCGGTATAGACCTGAGCAATAGTA‑TTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAcaggcgcaatggccggtttccgattgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatcta                                                                                                                                                                                   >  1:131113‑M1/1‑128 (MQ=255)                                                                                                                                                                                                                  gAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTCGGGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑‑AAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGc                                                                                                                                                                                                                                                                                >  1:579087/1‑152 (MQ=255)                                                                                                                                                                                                                   aGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatctaacgcgacaaagtaggttctgctttaccatc                                                                                                                                                       >  1:579088‑M1/1‑115 (MQ=255)                                                                                                                                                                                                                         aGTATTTCTTTGTACCTTATAAATTGATTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAAACCGgcgc                                                                                                                                                                                                                                                                                                             <  1:579083/120‑1 (MQ=255)                                                                                                                                                                                                                          gTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTtgatga                                                                                                                                                                                               <  1:579084/221‑1 (MQ=255)                                                                                                                                                                                                                             tttCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGACCCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑‑AAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGca                                                                                                                                                                                                                         <  1:579086/193‑1 (MQ=255)                                                                                                                                                                                                                             tttCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGca                                                                                                                                                                                                                         <  1:579085/193‑1 (MQ=255)                                                                                                                                                                                                                                           ataAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatctaacgcgacaagtaggttctgcttaccatcacgt                                                                                                                                                     >  1:579090‑M1/1‑92 (MQ=255)                                                                                                                                                                                                                                            taAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattcttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatctaacgcgacaaagtaggtttctgctttaccatcacgttgacccaggatgtaggtctggcaagtaccgcgagcatggatcatgctcacttcagacgaa                                                                                       >  1:968369‑M1/1‑90 (MQ=255)                                                                                                                                                                                                                                                  g‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCtgtg                                                                                                                                                                                                                                              <  1:131114/153‑1 (MQ=255)                                                                                                                                                                                                                                                        tcCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagca                                                                                                                                                                                                                                >  1:131116‑M1/1‑79 (MQ=255)                                                                                                                                                                                                                                                             gACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatct                                                                                                                                                                                      >  1:579091‑M1/1‑75 (MQ=255)                                                                                                                                                                                                                                                              aCCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTa                                                                                                                                                                                                                                <  1:131115/155‑1 (MQ=255)                                                                                                                                                                                                                                                                                   tCACA‑TTTCGGGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatctaacgcgacaaagtaggttctgctttaccatcacgttgacccaggatgtaggtctggcaagtaccgcgagcatggatcatgctcacttcagacgaaggtttacccgcaatttgtgcaacctgcgcc                                                         >  1:579092‑M1/1‑55 (MQ=255)                                                                                                                                                                                                                                                                                           tC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatctaacgcgacaaagtaggtttctgctttaccatcacgttgacccaggatgtaggtctggcaagtaccgcgagcatggatcatgctcacttcagacgaaggtttacccgcaattttgtgcaacctgcgcccg                                                     >  1:131118‑M1/1‑47 (MQ=255)                                                                                                                                                                                                                                                                                                     taatTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTTGATGACATGTCC‑GGTATCATCTAACGCGACaag                                                                                                                                                                  <  1:579093/179‑2 (MQ=255)                                                                                                                                                                                                                                                                                                                    aaTTAAGAACTCAGGCCAAAAAAAcggcgcaatggccggtttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtatcatctaacgcgacaaagtaggtttctgctttaccatcacgttgacccaggatgtaggtctggcaagtaccgcgagcatggatcatgctcacttcagacgaaaggtttacccgcaattttgtgcaacctgcgcccggctcatgccttttttga                                   >  1:131119‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                                                                                                         aGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTtgatga                                                                                                                                                                                               <  1:1018028/132‑1 (MQ=255)                                                                                                                                                                                                                                                                                                                               cAGGCCAAAAAAAcggcgcaatggccggttttccgttgttactcaagctttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtctgataaccggagttgatgacatgtccggtactcatctaacagcgacaaagtaggtttctgctttaccatcacgttgacccaggatgtaggtctggcaaactaccgcgagtcatggatcatg                                                                                                >  1:579097‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                                                                                                                                     aggccaaaaCCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACG‑ATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTTGATGACATGTCC‑GGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGACCCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTACCCCGCAATTTGTGCAACCTGCGCCCGGCTCATGCCTTTTTTGACGTCTTTCACCACAGGCTGTACaa  <  1:579095/303‑1 (MQ=255)                                                                                                                                                                                                                                                                                                                                        aaaaaaCCGGCGCAATGGCCGGTTTCCGTTGTTACTCAAAGCTTTCATGACGAATTGATTTACTTCGCAGCCTGTGGATCAAGTGTCGTATTCAGCACAGGTCTAGATAACCGGAGTtgaatga                                                                                                                                                                                              <  1:579098/124‑5 (MQ=255)                                                                                                                                                                                                                                                                                                                                         aaacggcgcaatggccggtttccgttgttactcaagcttttcagacgaattgattacttcgcagcctgtggatcagtgtcgtattcagcacaggtcttgataaccggagttgatgacatgtccggtatcatc                                                                                                                                                                                     >  1:579100‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                                     GCGCGCATTTTTGATACCAGTAAAGAGGTAGACATGCCCGCAGAACAAAACAGATAAATGTGTTTCTTTTCCATAAAACTGCCCTCATCGACGATTATCTGTCAGCCAGACACTCCGCAAGCCTTAACCTGCTTCCATGCTCT‑GGGTAACTTGCGAAACCAACATGAC‑‑‑TTTTTTTGTGGCTGAAAGGAGTATACGGTATAGACCTGAGCAATAGTATTTCTTTG‑ACCTTATAAATTG‑TTTCTCCTTGACCTGTGGTTATGA‑CCCTCTTCACA‑TTTC‑GGGCAAATAATTCGCGAAG‑ATAATTAAGAACTCAGGCC‑AAAAAAAACCGGCGCAATGGCCGGTTTCCGTTGTTACTC‑AAGCTTTCA‑GACGAATTGA‑TTACTTCGCAGCCTGTGGATC‑AGTGTCGTATTCAGCACAGGTCT‑GATAACCGGAGTTGATGACATGTCC‑GGTATCATCTAACGCGACAAAGTAGGTTTCTGCTTTACCATCACGTTGA‑CCCAGGATGTAGGTCTGGCAAGTACCGCGAGCATGGATCATGCTCACTTCAGACGAAGGTTTA‑CCCGCAATTTGTGCAACCTGCGCCCGGCTCATGCCTTTTTTGACGTCTTTCACCACAGGCTGTACAA  >  NC_000913/1821546‑1822165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.