New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3427075 =	NA (NA)	15 (0.330)	14/374	2.4	40.5%	intergenic (‑42/+1)	alaU/ileU	tRNA‑Ala/tRNA‑Ile
	?	NC_000913	4037222 =	22 (0.480)					intergenic (+5/‑38)	ileT/alaT	tRNA‑Ile/tRNA‑Ala

GTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGA‑TTTTTAAAGAGC‑AAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTA‑TTTAATCACTACAGAGATGGTGGAGCTATGC‑GGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCT‑‑CCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTC‑TTCAAA‑TTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGC  >  NC_000913/3426799‑3427337                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                       gTTTCACTTCAGAGTTGCGAAAA‑TTGAGAGACTCACGAACAAC‑TTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGA‑TTTTTAAAGAGC‑AAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTA‑TTTAATCACTACAGAGATGGTGGAGCTATGCGGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCT‑‑CCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTC‑TTCAAA‑TTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCCACTGAg                                                                                                                                                                                                     >  1:788073/1‑343 (MQ=255)           agagTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTT‑AATTTTCAGCTTGATCCAGATTTTTTAAAGAGCAAAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTATTTTAATCACTACAGAGATGGTGGAGCTATGC‑GGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCT‑‑CCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTTCAAA‑TTTGCCGTGC‑AATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTa                                                                                                                                                                                                               <  1:245335/326‑1 (MQ=11)                                                                                                                          ggTACACTCTGAAGTATTTTTTA‑TTTAATCACTACAGAGATGGTGGAGCTATGC‑GGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTC‑CCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTC‑TTCAAA‑TTTGCCGTGC‑AATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGc                                                                                                   <  1:788084/323‑1 (MQ=11)                                                                                                                                  ctGAAGTATTTTTTA‑TTTAATCACTACAGAGATGGTGGAGCTATGCGGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCT‑‑CCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTC‑TTCAAATTTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAAGGTTCCCTACGGTTA‑CTTGTTACGACTTCA‑CCCAGTCATGAATCACAAAGTGGTAAGCGCCCT‑CCGAAGGTTAAGCTA‑CTACTTCTTTTGc  >  1:788089/1‑410 (MQ=11)                                                                                                                                                     aaTCACTACAGAGATGGTGGAGCTATGC‑GGGATCGAACCGCAGACCTCCTGCGTGC‑AAGCAGGCGCTCTCCCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTC‑TTCAAA‑TTTGCCGTGC‑AATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCaa                                                                                                                                        <  1:788091/260‑1 (MQ=9)                                                                                                                                                                                                                                                                            caaattGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTtaag                                                                                                                        >  1:1215682/5‑162 (MQ=1)                                                                                                                                                                                                                                                                            caaattGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                                           >  1:15196/5‑207 (MQ=1)                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                       GTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGA‑TTTTTAAAGAGC‑AAAACTTCGCAGTGAACCTTTGCAGGTACACTCTGAAGTATTTTTTA‑TTTAATCACTACAGAGATGGTGGAGCTATGC‑GGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCT‑‑CCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTC‑TTCAAA‑TTTGCCGTGCAAATTTGGTAGGCCTGAGTGGACTTGAACCACCGACCTCACCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGC  >  NC_000913/3426799‑3427337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.