| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 890745 | 58 (1.310) | 88 (1.980) | 35/132 | 0.0 | 60.3% | coding (9/258 nt) | grxA | reduced glutaredoxin 1 |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
Only 100 of 149 total aligned reads displayed.
TGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAA > NC_000913/890678‑890812 | tGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACg > 1:516711/1‑68 (MQ=255) aTTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGc < 1:1505311/68‑1 (MQ=255) ctcAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgact < 1:282956‑M1/68‑11 (MQ=255) ctcAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgact < 1:1161222‑M1/68‑11 (MQ=255) gCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaa < 1:1278099‑M1/68‑15 (MQ=255) cAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaact < 1:1433577‑M1/68‑17 (MQ=255) gATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaactta < 1:1347046‑M1/68‑19 (MQ=255) aTCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTctcc < 1:20683/68‑1 (MQ=255) cTTTTGTACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattg > 1:2143575‑M1/1‑47 (MQ=255) cTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattg < 1:931607‑M1/68‑22 (MQ=255) cTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattg > 1:1710367‑M1/1‑47 (MQ=255) cTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTtctgtctct > 1:1666451/1‑65 (MQ=255) cTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTctcctc > 1:776441/1‑68 (MQ=255) cTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTctcctc > 1:2638410/1‑68 (MQ=255) cTTTTGCACGCACACAGTAAGGGCAACCCGAACGAACAAAAATAACGggtaatgactccaacttattg > 1:2794794‑M1/1‑47 (MQ=255) tGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatag > 1:535730‑M1/1‑43 (MQ=255) gcacgcacACAGTAAGGGCATCCGGAACGACCAAAAATAACGggtaatgactccaacttattgatagt < 1:790368‑M1/68‑27 (MQ=255) gcacgcacACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGa < 1:382394/68‑1 (MQ=255) cacgcacACAGTAAGGGCAACCCGAACGACCAAAAATAACGtgtaatgactccaacttattgatagtg < 1:1611806‑M1/68‑28 (MQ=255) cacgcacACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtg < 1:3520310‑M1/68‑28 (MQ=255) acgcacACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgt < 1:1229888‑M1/68‑29 (MQ=255) acgcacACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgt < 1:2426642‑M1/68‑29 (MQ=255) gcacACAGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttt < 1:569115‑M1/68‑31 (MQ=255) cagcaGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATg < 1:291518/65‑1 (MQ=255) cagagtaAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttat < 1:3154797‑M1/65‑34 (MQ=255) acaGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatg > 1:3247795‑M1/1‑34 (MQ=255) acaGTAAGGGCAACCCGAACGACCAAAAATAACGgataatgactccaacttattgatagtgttttatg > 1:2797961‑M1/1‑34 (MQ=255) acaGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGcc > 1:2754762/1‑68 (MQ=255) acaGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGcc < 1:2611822/68‑1 (MQ=255) acaGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGcc < 1:877241/68‑1 (MQ=255) caGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgt < 1:124872‑M1/68‑36 (MQ=255) caGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCt < 1:3355081/68‑1 (MQ=255) aGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgtt > 1:3343819‑M1/1‑32 (MQ=255) aGTAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgtt > 1:9476‑M1/1‑32 (MQ=255) aGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTg < 1:2013951/68‑1 (MQ=255) gTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGt < 1:1230500/68‑1 (MQ=255) gTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGt < 1:2525424/68‑1 (MQ=255) tAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttca > 1:2761475‑M1/1‑30 (MQ=255) tAAGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttca > 1:907751‑M1/1‑30 (MQ=255) tAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTa > 1:598198/1‑68 (MQ=255) tAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTa > 1:2990577/1‑68 (MQ=255) aaGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcag < 1:169533‑M1/68‑40 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcaga < 1:3051913‑M1/68‑41 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcaga < 1:1840249‑M1/68‑41 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcaga < 1:1456825‑M1/68‑41 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcaga < 1:157827‑M1/68‑41 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcaga < 1:2209559‑M1/68‑41 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGtcct > 1:3381344/1‑65 (MQ=255) aGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAAt > 1:1177319/1‑68 (MQ=255) ggCAACNCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:2115653/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtcatgactcccacttattgatagtgttttatgttcagata > 1:1958311‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcatata > 1:2608000‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:2572322‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:2909671‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:3159442‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:504872‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:82232‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:219250‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:2476813‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:2407368‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagata > 1:234094‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGggtaatgactccaacttatagatagtgttttatgttcagata > 1:2550023‑M1/1‑26 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTaactg > 1:1029975/1‑65 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:960180/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:736673/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:635715/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:1991250/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:827489/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:3536994/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:2250602/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:2264131/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:2368193/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:3284337/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:2385891/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:3096481/1‑68 (MQ=255) ggCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGa > 1:3095641/1‑68 (MQ=255) cAACCCGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataat < 1:930768‑M1/68‑45 (MQ=255) cAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATc > 1:3349219/1‑68 (MQ=255) cccGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:2822284‑M1/68‑48 (MQ=255) cccGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:641174‑M1/68‑48 (MQ=255) cccGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcc < 1:421213‑M1/68‑48 (MQ=255) ccGAACGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgccc > 1:3482811‑M1/1‑20 (MQ=255) ccGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGc > 1:2630630/1‑68 (MQ=255) aCGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg < 1:1824124‑M1/68‑53 (MQ=255) cGACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga > 1:2537895‑M1/1‑15 (MQ=255) gACCAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac < 1:3362296‑M1/68‑55 (MQ=255) aCCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATg < 1:1959759/68‑1 (MQ=255) cAAAAATAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt < 1:1874665‑M1/68‑58 (MQ=255) aaaaTAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt < 1:1362947‑M1/68‑60 (MQ=255) aTAACGggtaatgactccaacttattgatagtgttttatgttcagataatgccggaggctttggcatg > 1:2081601‑M1/1‑6 (MQ=255) aTAACGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat < 1:3074735‑M1/68‑63 (MQ=255) aTAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCAAGCTAAAATGTATTCGc > 1:2630914/1‑68 (MQ=255) aCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca < 1:755500‑M1/68‑66 (MQ=255) aCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca < 1:2926664‑M1/68‑66 (MQ=255) aCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgca < 1:108732‑M1/68‑66 (MQ=255) gggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagc < 1:107757‑M1/68‑68 (MQ=255) ggTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa < 1:496685/68‑1 (MQ=255) ggTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa > 1:1988446/1‑68 (MQ=255) ggTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGaaa > 1:1408827/1‑68 (MQ=255) ggTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGATGaaa > 1:2332032/1‑68 (MQ=255) | TGCTCAATTTCTCAGCCAGATCTTTTGCACGCACACAGTAAGGGCAACCCGAACGACCAAAAATAACGGTTTGCATTATTTCTCTCCTCATAGATTTATGCCTGTAATGATCACGCTAAAATGTATTCGCTGAAA > NC_000913/890678‑890812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |