| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 890745 | 58 (1.310) | 88 (1.980) | 35/132 | 0.0 | 60.3% | coding (9/258 nt) | grxA | reduced glutaredoxin 1 |
| ? | NC_000913 | = 1050545 | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTT > NC_000913/1050484‑1050611 | aTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAt < 1:1118252/68‑1 (MQ=33)aTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAt > 1:2173730/1‑68 (MQ=33) gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtac > 1:254916/1‑68 (MQ=37) gACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtac < 1:3338781/68‑1 (MQ=37) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg > 1:1077798/1‑68 (MQ=39) aCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacg > 1:2937054/1‑68 (MQ=39) aaaGTCATCGGGCATTATNTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 1:2708620/1‑68 (MQ=255) aaaGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgta > 1:3244643/1‑68 (MQ=255) aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtacg < 1:834195/68‑1 (MQ=255) aGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtacg < 1:225793/68‑1 (MQ=255) tCATCGGGCATTATGTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATAGGTACGCt < 1:3181897/68‑1 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCt < 1:1996197/68‑1 (MQ=255) tCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCt > 1:1447073/1‑68 (MQ=255) ggtcATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCGTTACCGACAATACGTACGCTGgaga < 1:3151306/65‑1 (MQ=17) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga > 1:751321/1‑68 (MQ=255) gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgaga < 1:1368115/68‑1 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGAt > 1:3396758/1‑68 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGAt > 1:1374839/1‑68 (MQ=255) ggCATTATCTGAACATAAAACACTATCAATAAGTTGGACTCATTACCGACAATACGTACGCTTGAGAt > 1:2340801/1‑68 (MQ=255) aTCTGAACATAAGACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAt < 1:2494865/68‑1 (MQ=255) aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAt < 1:2155505/68‑1 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt > 1:3242354/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt > 1:3228568/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt > 1:2848302/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt > 1:8634/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt > 1:267841/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAtt > 1:2245215/1‑68 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGCAtg > 1:2656203/1‑67 (MQ=255) tCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTCGAGATCAGGAtt > 1:3131199/1‑68 (MQ=255) aaCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCt > 1:45217/1‑68 (MQ=255) aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTa > 1:749364/1‑68 (MQ=255) cATAAAACACTATCAATAAGTGGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTAc < 1:3571985/68‑1 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:3342750/68‑1 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:2856359/68‑1 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:3240889/68‑1 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:163204/68‑1 (MQ=255) aaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:3174593/68‑1 (MQ=255) aaCACTATCAATAAGTGGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGa < 1:2238896/68‑1 (MQ=255) cgcTAGCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:1067617/66‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTGCCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAga > 1:2736039/1‑67 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:1524320/68‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:2208045/68‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGt < 1:342149/68‑1 (MQ=255) cacTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGAGTGTCTACTTTGAGt < 1:671744/68‑1 (MQ=255) cTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGtat > 1:758262/1‑68 (MQ=255) tATCAATAAGTTGGACTCATTACCGACAATACGTGCGCTTGAGATCAGGATTGTCTACTTTGAGtata < 1:2994450/68‑1 (MQ=255) cAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACa > 1:1005864/1‑68 (MQ=255) aaTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACAt < 1:1776527/68‑1 (MQ=255) aGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCtt > 1:1219374/1‑68 (MQ=255) gTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtg < 1:642956/68‑1 (MQ=255) ttGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgt > 1:1542857/1‑68 (MQ=255) ttGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTtgt > 1:3427746/1‑68 (MQ=255) aGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaaa > 1:3433476/1‑68 (MQ=255) aGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGaaa < 1:2493856/68‑1 (MQ=255) tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATGCTTGTGAAAtc > 1:3217928/1‑68 (MQ=255) tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtc > 1:2369063/1‑68 (MQ=255) tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtc > 1:3082732/1‑68 (MQ=255) cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtct < 1:3459747/68‑1 (MQ=255) cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtct < 1:3034381/68‑1 (MQ=255) aTTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAAtctc < 1:3509180/68‑1 (MQ=255) ttACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc < 1:2034497/68‑1 (MQ=255) ttACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc < 1:3172473/68‑1 (MQ=255) ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCtt > 1:955481/1‑68 (MQ=255) | ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTT > NC_000913/1050484‑1050611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |