| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 53 (1.040) | 24/128 | 0.3 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2806300 | 0 (0.000) | coding (291/1065 nt) | proW | glycine betaine ABC transporter membrane subunit ProW | |||||
ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/290695‑290634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGG < NC_000913/2806300‑2806239 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAA > 1:155001/1‑65 AAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGT < 1:3805235/65‑1 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGA > 1:3800333/1‑65 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGA > 1:2858832/1‑65 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:2902922/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:963627/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:930539/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:3688683/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:3608239/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:3509857/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:3294225/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:2517765/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:1754971/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:1616433/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:1069564/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:14446/65‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:1339465/65‑1 CATCGGGAATTATCTAAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGG < 1:1141342/65‑1 TCGGGCATTATCTGAACATAAAACACTATCAAAAAATTGGAGTCATTACCGAAACCGTTGAGGAT < 1:3059898/65‑1 gaGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATAT < 1:3291819/63‑1 GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATAT < 1:3492647/65‑1 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATA > 1:358066/1‑65 GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATA < 1:1771207/65‑1 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATACTCAACC > 1:1840825/1‑65 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACC > 1:497076/1‑65 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACC > 1:1382867/1‑65 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACC > 1:1591499/1‑65 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGA < 1:51151/65‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGA < 1:3507302/65‑1 AACATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAA < 1:1163562/65‑1 CATAAAACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACG < 1:1656499/65‑1 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG < 1:1023302/65‑1 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG > 1:901938/1‑65 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG > 1:3364483/1‑65 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG > 1:766294/1‑65 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG > 1:4015737/1‑65 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG < 1:143992/65‑1 ACACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACG > 1:1473346/1‑65 CACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATACTCAACCGGAACGCGCACGC > 1:14551/1‑65 ACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCC > 1:3232181/1‑65 ACTATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCC > 1:3994411/1‑65 TATCAATAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCT < 1:2347690/65‑1 TAAGTTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGc > 1:1944083/1‑64 AGTTGGAGCCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGACGACG > 1:1938845/1‑65 TTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGG > 1:2194058/1‑65 TTGGAGTCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGG > 1:2439050/1‑65 TCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAA > 1:3118435/1‑65 TCATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAA > 1:325639/1‑65 ATTACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAAT < 1:2993964/65‑1 ACCGAAACCGTTGAGGATATAATCAACCGGAGCGCGCACGCCCTGGAAGACGGGACGGAAATGGG < 1:1005506/65‑1 ACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGG > 1:4013303/1‑65 ACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGG < 1:69369/65‑1 ACCGAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGG < 1:1661191/65‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/290695‑290634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAACCGTTGAGGATATAATCAACCGGAACGCGCACGCCCTGGAAGACGGGACGGAAATGGG < NC_000913/2806300‑2806239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |