| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 53 (1.040) | 24/128 | 0.3 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2806300 | 0 (0.000) | coding (291/1065 nt) | proW | glycine betaine ABC transporter membrane subunit ProW | |||||
ATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT > NC_000913/290570‑290695 | aTGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCAGTTACCgg < 1:3503279/65‑1 (MQ=14) tGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCggg < 1:2126230/65‑1 (MQ=33) tGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCggg < 1:4004666/65‑1 (MQ=33) tGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCggg < 1:545526/65‑1 (MQ=33) gCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTa > 1:510885/1‑65 (MQ=37) gCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGGGATGGAGGCGATATATCTGTTACCGGGTa > 1:227250/1‑65 (MQ=255) gAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAAt > 1:2415389/1‑65 (MQ=40) ggCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGa < 1:3040575/65‑1 (MQ=255) ggCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGa < 1:3808690/65‑1 (MQ=255) ggCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGa < 1:3953896/65‑1 (MQ=255) gCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGAc < 1:3854074/65‑1 (MQ=255) gCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGGAATGAc > 1:3577400/1‑65 (MQ=255) ctgcCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCaa < 1:387522/65‑1 (MQ=255) tgcCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAAc > 1:1072344/1‑65 (MQ=255) ccTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACtt > 1:2961343/1‑65 (MQ=255) ccTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACtt > 1:171151/1‑65 (MQ=255) cTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTa < 1:497320/65‑1 (MQ=255) cTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTa < 1:3707315/65‑1 (MQ=255) ttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGAt > 1:3380135/1‑65 (MQ=255) ttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGAt > 1:2728849/1‑65 (MQ=255) ttcattacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGAt < 1:339755/65‑1 (MQ=255) tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAgtgt < 1:3071242/65‑1 (MQ=255) tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAgtgt < 1:2356866/65‑1 (MQ=255) tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAgtgt < 1:826656/65‑1 (MQ=255) tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAgtgt < 1:1959145/65‑1 (MQ=255) tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAgtgt < 1:1272883/65‑1 (MQ=255) tacttcaGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAgtgt < 1:64095/65‑1 (MQ=255) aGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATg < 1:3537010/65‑1 (MQ=255) gCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 1:1878085/65‑1 (MQ=255) gCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 1:2018453/65‑1 (MQ=255) cGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt < 1:2140201/65‑1 (MQ=255) tGATGGAGGCGTTATATCTGTTACC‑GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:3830580/65‑1 (MQ=18) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAGCTTATTGATAGTGTTTTATGTTCAGa < 1:1579067/65‑1 (MQ=255) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:1114197/65‑1 (MQ=255) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:2678250/65‑1 (MQ=255) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:3738405/65‑1 (MQ=255) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:1238762/65‑1 (MQ=255) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:2161350/65‑1 (MQ=255) gATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:683568/65‑1 (MQ=255) gAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt > 1:3431159/1‑65 (MQ=255) gAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAt > 1:3461707/1‑65 (MQ=255) ggCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc > 1:443161/1‑65 (MQ=255) gCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc < 1:818504/65‑1 (MQ=255) gCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc < 1:908147/65‑1 (MQ=255) gCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc < 1:1664761/65‑1 (MQ=255) gCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc > 1:173061/1‑65 (MQ=255) atCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc < 1:2475867/65‑1 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:3026840/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:1382736/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:688640/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:1759360/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:1992294/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:494090/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:2050958/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:2274542/1‑65 (MQ=255) tCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt < 1:2914240/65‑1 (MQ=255) tGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt > 1:3915959/1‑65 (MQ=255) tGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 1:1760894/65‑1 (MQ=255) tGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt > 1:2730989/1‑65 (MQ=255) tGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt > 1:3756391/1‑65 (MQ=255) tGTTACCGGGAAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAAGGCCCGATGACttt > 1:1755244/1‑65 (MQ=255) ggTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 1:3427952/64‑1 (MQ=255) ttACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt < 1:2636212/65‑1 (MQ=39) aCCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa > 1:1236105/1‑65 (MQ=35) ccGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt < 1:2082079/65‑1 (MQ=33) ccGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt < 1:859807/65‑1 (MQ=33) | ATGGCGAGGCTTGCTGCCTTACTTCATTACTTCAGCGGTGATGGAGGCGATATATCTGTTACCGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT > NC_000913/290570‑290695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |