| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 217 (4.340) | 44/126 | 0.0 | 73.8% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 890745 | 77 (1.540) | coding (9/258 nt) | grxA | reduced glutaredoxin 1 | |||||
GGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT > NC_000913/279099‑279224 | ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:498144/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:1145886/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:1764502/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:2783100/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:2468631/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:2098096/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:1558640/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCg > 1:1573313/1‑65 (MQ=255)ggTACGCAGGGAACCGGCGCGCAGGCTGACTGAGGCTTCATCGAGCGATTTATCTCTTTGGCCCg > 1:1617003/1‑65 (MQ=255) gTACGCAGGGAAGCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCgg < 1:1210785/65‑1 (MQ=255) gTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCgg < 1:2542919/65‑1 (MQ=255) gCAGGGAACCGGCGCGCAGGCTGAGTTAGGCTATATCGAGCGATTTATCGATTTGGCCCGGAAAt > 1:3835429/1‑65 (MQ=255) gCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGTGCGCTTTATCGATTTGGCCCGGTAAt > 1:2991575/1‑65 (MQ=255) gCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCGGGTAAt > 1:3340572/1‑65 (MQ=255) gCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAAt > 1:1782626/1‑65 (MQ=255) gCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAAt > 1:2904636/1‑65 (MQ=255) aGGGCACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGa < 1:473249/65‑1 (MQ=255) aGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGa < 1:2146108/65‑1 (MQ=255) aGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGa < 1:3047339/65‑1 (MQ=255) aGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGa < 1:1798868/65‑1 (MQ=255) aGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGa > 1:1637002/1‑65 (MQ=255) gggAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGAc < 1:3320496/65‑1 (MQ=255) gggAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGAc > 1:2353171/1‑65 (MQ=255) ggAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACt < 1:652082/65‑1 (MQ=255) gcaaCCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACt < 1:2480204/63‑1 (MQ=255) aCCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCa > 1:64816/1‑65 (MQ=255) aCCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGAATCCa > 1:1525196/1‑65 (MQ=255) ccGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTccca > 1:3254287/1‑63 (MQ=255) ccGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCaa > 1:2997500/1‑65 (MQ=255) ccGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCaa > 1:1247165/1‑65 (MQ=255) cGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAAc < 1:2860609/65‑1 (MQ=255) ggCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACt < 1:3422330/65‑1 (MQ=255) ggCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACt > 1:3579675/1‑65 (MQ=255) ggCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACt < 1:2795304/65‑1 (MQ=255) cgcgcgcAAGCTGACGGATTCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACt < 1:796235/64‑1 (MQ=255) aGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGAt < 1:648466/65‑1 (MQ=255) gCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAg > 1:52326/1‑65 (MQ=255) tgagtgagGCTTCATCGAGCGGTTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAgtg > 1:1060696/1‑65 (MQ=255) tgagtgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAggg > 1:323097/1‑63 (MQ=255) gagtgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAgtgt < 1:1815173/65‑1 (MQ=255) gagtgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAgtgt < 1:891012/65‑1 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:3563303/1‑65 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:544797/1‑65 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:943429/1‑65 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:1281281/1‑65 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:116629/1‑65 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:185068/1‑65 (MQ=255) tgagGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGtttt > 1:2241938/1‑65 (MQ=255) agGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTAt < 1:923112/65‑1 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt < 1:1489732/65‑1 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:2861562/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:737623/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:3540353/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:2338300/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:1859371/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:2020832/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:1184442/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:3938842/1‑65 (MQ=255) gCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGt > 1:3893709/1‑65 (MQ=255) cTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt > 1:3800479/1‑65 (MQ=255) cTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGtt > 1:3576595/1‑65 (MQ=255) aTCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:836043/65‑1 (MQ=255) aTCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:3726658/1‑65 (MQ=255) aTCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa < 1:1884378/65‑1 (MQ=255) aTCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGa > 1:2470059/1‑65 (MQ=255) aTCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTACTGATAGTGTTTTATGTTCAGa < 1:4000650/65‑1 (MQ=255) gATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc < 1:302899/65‑1 (MQ=255) gATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGcc < 1:2896076/65‑1 (MQ=255) gATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt < 1:3875946/65‑1 (MQ=255) gATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:3778096/1‑65 (MQ=255) gATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACt > 1:3637537/1‑65 (MQ=255) tttGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 1:3904898/65‑1 (MQ=255) tttGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 1:1038726/65‑1 (MQ=255) tttGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 1:671386/65‑1 (MQ=255) tttGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt < 1:2028448/65‑1 (MQ=255) tGGCCCGGTGATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt < 1:2904754/65‑1 (MQ=255) tGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt < 1:3365120/65‑1 (MQ=39) tGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt > 1:28006/1‑65 (MQ=39) cccGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt > 1:1815327/1‑65 (MQ=33) cccGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt > 1:447633/1‑65 (MQ=33) cccGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt < 1:812058/65‑1 (MQ=33) | GGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAT > NC_000913/279099‑279224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |