mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 310,934 | 0 | A | C | 54.2% | 1.4 / 32.7 | 24 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 1,374,034 | 0 | G | . | 52.9% | 19.6 / 39.8 | 17 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 4,296,060 | 0 | C | T | 48.3% | 1.0 / 87.8 | 60 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,374,036 | 0 | T | G | 45.0% | 5.6 / 23.4 | 20 | L272R (CTC→CGC) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,374,039 | 0 | T | G | 45.0% | 2.5 / 25.6 | 20 | F273C (TTC→TGC) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 1,374,040 | 0 | C | T | 45.0% | ‑1.0 / 24.3 | 20 | F273F (TTC→TTT) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 2,280,704 | 0 | A | C | 45.0% | 5.5 / 21.0 | 20 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| * | NC_000913 | 987,014 | 0 | A | C | 42.9% | 7.8 / 10.8 | 14 | intergenic (‑32/+571) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 1,374,038 | 0 | T | C | 42.9% | 5.9 / 22.1 | 21 | F273L (TTC→CTC) ‡ | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 2,028,747 | 0 | G | C | 41.7% | 26.2 / 20.2 | 24 | A207G (GCG→GGG) | yedI | conserved inner membrane protein YedI |
| * | NC_000913 | 4,414,906 | 0 | T | G | 35.3% | 17.4 / 13.4 | 17 | V211G (GTG→GGG) | aidB | putative acyl‑CoA dehydrogenase AidB |
| * | NC_000913 | 151,656 | 0 | T | G | 30.0% | 67.8 / 29.1 | 40 | A192A (GCA→GCC) | yadL | putative fimbrial protein YadL |
| * | NC_000913 | 1,818,385 | 0 | A | C | 30.0% | 30.9 / 10.2 | 20 | V39G (GTG→GGG) | chbF | monoacetylchitobiose‑6‑phosphate hydrolase |
| * | NC_000913 | 1,203,112 | 0 | T | G | 29.6% | 47.7 / 11.8 | 27 | V30G (GTT→GGT) | ymfT | e14 prophage; putative DNA‑binding transcriptional regulator YmfT |
| * | NC_000913 | 3,773,700 | 0 | A | T | 28.1% | 61.4 / 19.3 | 32 | N474Y (AAC→TAC) | mtlA | mannitol‑specific PTS enzyme IICBA component |
| * | NC_000913 | 3,086,207 | 0 | T | G | 28.0% | 38.7 / 14.4 | 25 | G7G (GGT→GGG) | yqgC | protein YqgC |
| * | NC_000913 | 4,154,935 | 0 | A | C | 27.8% | 71.8 / 17.2 | 37 | intergenic (‑88/‑66) | argE/argC | acetylornithine deacetylase/N‑acetylglutamylphosphate reductase |
| * | NC_000913 | 3,563,481 | 0 | T | G | 21.9% | 69.4 / 11.9 | 32 | V490G (GTG→GGG) | glpD | aerobic glycerol 3‑phosphate dehydrogenase |