| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 485,977 | IS5 (+) +4 bp | coding (217‑220/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 273955 = | NA (NA) | 52 (1.040) | 29/134 | 0.1 | 92.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 485977 = | 4 (0.090) | coding (217/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 485980 | 4 (0.090) | 55 (1.100) | 30/134 | 0.1 | 92.8% | coding (220/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR |
| ? | NC_000913 | = 575785 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/485914‑485980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA < NC_000913/575785‑575720 TTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGG < 1:1266650/68‑1TTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGG < 1:1422887/68‑1TTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGG < 1:1589150/68‑1 GACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGT < 1:343199/68‑1 CAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGC < 1:786526/68‑1 CAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGC < 1:291035/68‑1 AGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGA < 1:3569205/68‑1 TCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAAC > 1:3497874/1‑68 CGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACA > 1:1701826/1‑68 GATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAG < 1:2243967/68‑1 ATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGT < 1:1910421/68‑1 TTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTC > 1:782904/1‑68 TTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTC > 1:1519639/1‑68 TTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTC > 1:1218354/1‑68 TTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTC < 1:3341780/68‑1 TGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCC < 1:1866670/68‑1 TCAGTGNGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGA < 1:2609130/68‑1 TCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGA < 1:2105065/68‑1 TCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGA < 1:3724812/68‑1 TCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGA > 1:1293538/1‑68 TCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGCCCCTGA > 1:3894539/1‑68 GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGA < 1:92103/68‑1 GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGA < 1:2292983/68‑1 GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGA > 1:2888406/1‑68 GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGA < 1:1522054/68‑1 GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGA < 1:3898137/68‑1 AGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAG < 1:3297409/68‑1 GATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGA < 1:1436732/68‑1 GAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTT < 1:386260/68‑1 GAACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTT < 1:1755709/68‑1 ACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG > 1:3430640/1‑68 ACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG > 1:1837207/1‑68 ACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG > 1:1379992/1‑68 ACTGTCAGAATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG > 1:1323902/1‑68 ATCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 1:2169416/68‑1 TCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG > 1:2469151/1‑68 TCCAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG > 1:2992095/1‑68 CAATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC < 1:2934821/68‑1 ATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:2703027/1‑68 ATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT < 1:1273155/68‑1 ATATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT > 1:4052879/1‑68 ATTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATAGGAGATCATGTTGGTCATCTGGAGCCATAG < 1:2669477/68‑1 tgGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:149361/66‑1 TTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:123338/68‑1 TTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:2807255/68‑1 TTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:3563415/68‑1 TTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:1451472/68‑1 TTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:1884142/68‑1 TTGGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA < 1:3980689/68‑1 GGTGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC > 1:1752699/1‑68 TGAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG > 1:1853386/1‑68 GAACTAGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG < 1:19772/68‑1 AGGGAAGGTGCGAACAAGTCCCTGTTATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA < 1:2498067/68‑1 AGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA < 1:4084947/68‑1 AGGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA < 1:2852097/68‑1 TTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/485914‑485980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA < NC_000913/575785‑575720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |