mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,856,645 | 0 | T | G | 47.4% | 7.9 / 14.0 | 19 | K54N (AAA→AAC) | ygbA | protein YgbA |
| * | NC_000913 | 2,223,410 | 0 | T | G | 42.9% | 7.0 / 10.5 | 14 | V409G (GTG→GGG) | dld | D‑lactate dehydrogenase |
| * | NC_000913 | 2,040,689 | 0 | A | C | 41.7% | 25.8 / 11.6 | 24 | K69N (AAA→AAC) | msrQ | periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit |
| * | NC_000913 | 310,934 | 0 | A | C | 39.1% | 26.7 / 11.3 | 23 | F135V (TTC→GTC) | ecpR | DNA‑binding transcriptional dual regulator MatA |
| * | NC_000913 | 1,702,245 | 0 | A | C | 39.1% | 24.6 / 17.6 | 23 | T5P (ACC→CCC) | add | adenosine deaminase |
| * | NC_000913 | 2,280,704 | 0 | A | C | 36.4% | 23.5 / 13.0 | 23 | T25P (ACC→CCC) | radD | putative DNA repair helicase RadD |
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.7% | 43.4 / 43.9 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,867,258 | 0 | A | C | 33.3% | 55.3 / 10.5 | 33 | G55G (GGT→GGG) | ibpA | small heat shock protein IbpA |
| * | NC_000913 | 1,161,441 | 0 | T | G | 32.0% | 34.3 / 18.1 | 25 | A37A (GCA→GCC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 2,203,745 | 0 | T | G | 31.2% | 56.4 / 15.7 | 32 | V1156G (GTC→GGC) | yehI | DUF4132 domain‑containing protein YehI |
| * | NC_000913 | 4,154,935 | 0 | A | C | 26.8% | 90.1 / 18.5 | 42 | intergenic (‑88/‑66) | argE/argC | acetylornithine deacetylase/N‑acetylglutamylphosphate reductase |
| * | NC_000913 | 395,288 | 0 | A | T | 26.1% | 50.3 / 14.9 | 23 | F334I (TTC→ATC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 1,711,796 | 0 | A | C | 25.8% | 57.3 / 17.3 | 31 | T92P (ACC→CCC) | nth | endonuclease III |
| * | NC_000913 | 821,440 | 0 | C | T | 25.7% | 57.0 / 13.3 | 35 | F216F (TTC→TTT) | ybhM | Bax1‑I family protein YbhM |
| * | NC_000913 | 3,812,386 | 0 | C | A | 25.0% | 54.0 / 10.9 | 28 | L58F (TTG→TTT) | yicR | RadC‑like JAB domain‑containing protein YicR |
| * | NC_000913 | 1,374,034 | 0 | G | . | 23.5% | 36.8 / 12.1 | 17 | coding (813/882 nt) | ycjO | putative ABC transporter membrane subunit YcjO |
| * | NC_000913 | 395,291 | 0 | C | G | 23.1% | 56.3 / 14.5 | 26 | G333R (GGT→CGT) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| * | NC_000913 | 395,294 | 0 | C | G | 22.7% | 41.5 / 10.9 | 22 | G332R (GGC→CGC) | ampH | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 34 (0.820) | 8 (0.250) | 7/102 | 1.3 | 18.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 45 (1.420) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1603798 | 31 (0.750) | 6 (0.140) | 3/134 | 2.9 | 16.2% | coding (780/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| ? | NC_000913 | 1603802 = | 31 (0.750) | coding (784/1029 nt) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC | |||||