| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 25 (0.460) | 17/128 | 0.7 | 54.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 485687 | 21 (0.390) | intergenic (‑68/‑74) | acrA/acrR | multidrug efflux pump membrane fusion lipoprotein AcrA/DNA‑binding transcriptional repressor AcrR | |||||
AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291338‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTCGAGGT < NC_000913/485687‑485626 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCA > 1:3460727/1‑65 GAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAt < 1:3607881/65‑2 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAgca > 1:3462198/1‑62 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACG < 1:960261/65‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACG > 1:2693360/1‑65 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGC < 1:2188879/65‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAAT > 1:3112071/1‑65 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTT < 1:1613728/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTAT > 1:1613343/1‑65 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACT < 1:1893570/65‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCAT > 1:3646520/1‑65 ACACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTG > 1:4199357/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGAC > 1:603296/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGAC > 1:2862323/1‑65 ACTAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGCTTCTTAACTTCTGACCATTGAC > 1:2548260/1‑65 TAAATCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCA > 1:2631847/1‑65 TCAGTAAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTT > 1:1515467/1‑65 AAGTTGGCAGCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAAT < 1:2473654/65‑1 GCATCACCAAGGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGCAATCGGACACTC > 1:1789578/1‑65 GCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTC > 1:182825/1‑65 GCATCACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTC > 1:711667/1‑65 CACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTCGAGG < 1:1482999/65‑1 ACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTCGAGGT < 1:224843/65‑1 ACCAACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTCGAGGT < 1:170278/65‑1 ACCAACGCAGCAATGAGTTTATTAATTTTTGAACATTGACCAATTTGAAATCGGACACTCGAGGT < 1:4116717/65‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/291338‑291401‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGCAGCAATGGGTTTATTAACTTTTGACCATTGACCAATTTGAAATCGGACACTCGAGGT < NC_000913/485687‑485626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |