| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 291401 | NA (NA) | 25 (0.460) | 17/128 | 0.7 | 54.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 485687 | 21 (0.390) | intergenic (‑68/‑74) | acrA/acrR | multidrug efflux pump membrane fusion lipoprotein AcrA/DNA‑binding transcriptional repressor AcrR | |||||
AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGAT > NC_000913/291340‑291463 | aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGaa < 1:1697813/65‑1 (MQ=31) aGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAt > 1:3129805/1‑65 (MQ=33) gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAtt > 1:3191004/1‑65 (MQ=35) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAttt < 1:3591922/65‑1 (MQ=37) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGc > 1:3680448/1‑65 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGc > 1:3294181/1‑65 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGcc > 1:2508222/1‑65 (MQ=255) aGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGccc > 1:4150337/1‑65 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCg > 1:2611883/1‑65 (MQ=255) aCCTCAAAAACCCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:860252/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:1678372/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:3838284/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:3375509/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:3369546/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:1970157/1‑65 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGa > 1:3204358/1‑65 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTc < 1:3814227/65‑1 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc > 1:4280355/1‑65 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCAc > 1:744148/1‑65 (MQ=255) cagatcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:3558784/62‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa > 1:473168/1‑65 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:1926600/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa < 1:1791293/65‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa > 1:1502848/1‑65 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTa > 1:3502930/1‑65 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc < 1:3738280/65‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc < 1:2537418/65‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc < 1:1523742/65‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTAcc < 1:1424722/65‑1 (MQ=255) atcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCt > 1:300850/1‑65 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:486856/65‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:3750678/65‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:1818880/65‑1 (MQ=255) tACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGt < 1:3451879/65‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTc > 1:2393004/1‑65 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTc < 1:4024951/65‑1 (MQ=255) acacTAAATCAGTAAGTTGGCAGCATCACCAAATTTTCAGCCCGGATGTTTCACGTACCTATGTc > 1:2799225/1‑65 (MQ=255) ccTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCgc > 1:350156/2‑64 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGACTTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:1928841/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:1019008/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3557292/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3805931/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2412316/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:440885/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3977990/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3949370/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:2373904/1‑65 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3878137/1‑65 (MQ=255) acTAAATCAGTAAGTTGCCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGa > 1:3636559/1‑65 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGaa > 1:3299115/1‑65 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAat < 1:955334/65‑1 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAata < 1:1305922/65‑1 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAatat > 1:3924743/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGACTATCt > 1:42986/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1292307/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:84330/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1468418/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1575977/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1731242/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:1910740/1‑65 (MQ=255) tCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCt > 1:3513611/1‑65 (MQ=255) aGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTgg > 1:1725718/1‑65 (MQ=255) tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGcc < 1:2821702/65‑1 (MQ=255) tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGcc < 1:334004/65‑1 (MQ=255) aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGa > 1:821045/1‑65 (MQ=255) gTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGAt < 1:3546680/65‑1 (MQ=255) ggCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAg > 1:466063/1‑65 (MQ=255) gcagcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAgg < 1:764776/65‑1 (MQ=255) cagcaTCACCGAATTGTCAGCCCGGATGTTTCACGTCCCTATGTCGAATATCTGGCCGATAAGGt < 1:2815095/65‑1 (MQ=255) agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGtt > 1:2092649/1‑65 (MQ=255) ggaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCCATAAGGTTg > 1:2157141/3‑65 (MQ=255) aCCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGAt < 1:2307460/65‑1 (MQ=255) aCCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGAt < 1:1368994/65‑1 (MQ=255) | AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGAT > NC_000913/291340‑291463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |