| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 486,122 | IS1 (+) +8 bp | coding (362‑369/648 nt) | acrR → | DNA‑binding transcriptional repressor AcrR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 290634 = | NA (NA) | 93 (1.730) | 39/128 | 0.0 | 97.6% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 486122 = | 2 (0.040) | coding (362/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 20 (0.380) | 13/126 | 1.0 | 89.7% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 486129 | 2 (0.040) | coding (369/648 nt) | acrR | DNA‑binding transcriptional repressor AcrR | |||||
Only 100 of 116 total aligned reads displayed.
ACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGA > NC_000913/486058‑486185 | aCGGTGACAGAAGAACGGGGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCgg < 1:1747428/65‑1 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgag > 1:2551080‑M2/63‑65 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgag > 1:2765857‑M2/63‑65 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgag > 1:744116‑M2/63‑65 (MQ=255) atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccgag > 1:477534‑M2/63‑65 (MQ=255) gTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGgaga < 1:349980/65‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGaa > 1:3676529‑M2/61‑65 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGaa < 1:1475134‑M2/5‑1 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGaaa > 1:3977719‑M2/60‑65 (MQ=255) aCAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAt > 1:3227980/1‑65 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑g < 1:3241458‑M2/8‑1 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑g < 1:558693‑M2/8‑1 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑g > 1:1758874‑M2/58‑65 (MQ=255) gtcatcgggcattatctgcacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCt > 1:4328376‑M2/55‑65 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCt < 1:4079512‑M2/11‑1 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCt > 1:2688266‑M2/55‑65 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCt > 1:344275‑M2/55‑65 (MQ=255) gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCt > 1:1106573‑M2/55‑65 (MQ=255) tcatcgggcattatctgaacataaaacactgtcaataagttggagtcattaccGAGAAAT‑GGCtg > 1:2426988‑M2/54‑65 (MQ=255) tcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCtg > 1:247933‑M2/54‑65 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCtgt < 1:3261827‑M2/13‑1 (MQ=255) aCGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatg < 1:1117843‑M2/65‑8 (MQ=255) cgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGctgttgc > 1:3232573‑M2/50‑64 (MQ=255) cgggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCtgttgt < 1:3604553‑M2/16‑1 (MQ=255) cGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgc > 1:3986215‑M2/1‑57 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTtgtg < 1:2801667‑M2/17‑1 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgct < 1:2359004‑M2/65‑10 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgct > 1:2095205‑M2/1‑56 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgct < 1:1256162‑M2/65‑10 (MQ=255) ggCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgct < 1:3683461‑M2/65‑10 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGc > 1:3567391‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGc > 1:2397310‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGc > 1:2461835‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGc > 1:1555943‑M2/48‑65 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGc > 1:1807979‑M2/48‑65 (MQ=255) atctgaacataaagcactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAgg < 1:2840725‑M2/24‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAgg < 1:4028147‑M2/24‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAgg < 1:2053159‑M2/24‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAGT‑GGCTGTTGTGCAACAGGc > 1:2878212‑M2/41‑65 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGc < 1:1148485‑M2/25‑1 (MQ=255) tctgaacataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGc > 1:3457551‑M2/41‑65 (MQ=255) gcataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAAc < 1:2434776‑M2/30‑1 (MQ=255) gATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactga > 1:244717‑M2/1‑43 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGTACAAc < 1:1928289‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAAc < 1:3571393‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAAc < 1:4217440‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAAc < 1:664873‑M2/30‑1 (MQ=255) acataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAAc < 1:749246‑M2/30‑1 (MQ=255) cataaagcactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACg < 1:1925184‑M2/31‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACg < 1:4346190‑M2/31‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACg > 1:3351457‑M2/35‑65 (MQ=255) cataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACg < 1:3958395‑M2/31‑1 (MQ=255) cataaaacactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACg < 1:1402509‑M2/31‑1 (MQ=255) cataaaacactatcaataagttggaatcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACg < 1:2502888‑M2/31‑1 (MQ=255) taaaacactatcaataacttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTa < 1:3077569‑M2/33‑1 (MQ=255) catTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagt > 1:3582603‑M2/2‑37 (MQ=255) cactatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAAtctc > 1:3997933‑M2/28‑65 (MQ=255) actatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATctct > 1:1237873‑M2/27‑65 (MQ=255) actatcaataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATctct > 1:2201439‑M2/27‑65 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccgacttactgattttgtgtatga < 1:1870483‑M2/65‑35 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagtgtatga < 1:3732604‑M2/65‑35 (MQ=255) atTCCACAAATGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagtgtatga < 1:937651‑M2/65‑35 (MQ=255) aataagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTgg < 1:4229620‑M2/45‑1 (MQ=255) cacaAATGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagtgtatgatggt > 1:1842882‑M2/1‑27 (MQ=255) taagttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGgac > 1:2997435‑M2/19‑64 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg > 1:894516‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg > 1:1496357‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg > 1:3933594‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg > 1:4339208‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg < 1:1941120‑M2/49‑1 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAg > 1:4253114‑M2/17‑65 (MQ=255) agttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGAAATCTCTGTCTGGAAAg > 1:3599056‑M2/17‑65 (MQ=255) gttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGt < 1:566209‑M2/50‑1 (MQ=255) aaTGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagtgtatgatggtgttt < 1:616593‑M2/65‑43 (MQ=255) aaTGCGAATTTGTCGGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGt < 1:746666/65‑1 (MQ=255) ttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGtt > 1:3646386‑M2/15‑65 (MQ=255) ttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGtt > 1:1575481‑M2/15‑65 (MQ=255) ttggagtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCAAAACGTAATCTCTGTCTGGAAAGtt > 1:1434219‑M2/15‑65 (MQ=255) tGCGAATTTGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagtgtatgatggtgttttt < 1:4314680‑M2/65‑45 (MQ=255) agtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGa > 1:237325‑M2/11‑65 (MQ=255) agtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGa > 1:824784‑M2/11‑65 (MQ=255) agtcattaccGAGAAAT‑GGCCGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGa > 1:2424907‑M2/11‑65 (MQ=255) gtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGAc < 1:2709625‑M2/56‑1 (MQ=255) gtcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGAc > 1:333752‑M2/10‑65 (MQ=255) tcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGAcc > 1:3710991‑M2/9‑65 (MQ=255) tcattaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAAAGTAATCTCTGTCTGGAAAGTTATGAcc > 1:3796204‑M2/9‑65 (MQ=255) attgccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:703238‑M2/59‑1 (MQ=255) attaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:3437995‑M2/59‑1 (MQ=255) attaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:4291927‑M2/59‑1 (MQ=255) attaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:683252‑M2/59‑1 (MQ=255) attaccGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGt < 1:3405635‑M2/59‑1 (MQ=255) tGTCGGAGAAAT‑Gggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:3593354‑M2/1‑13 (MQ=255) accGAGAAATGGGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGtat > 1:2523117‑M2/4‑65 (MQ=255) accGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGtata > 1:1271250‑M2/4‑65 (MQ=255) ggAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCCCTGTCTGGAAAGTTATGACCGTATAGa < 1:3948111/65‑1 (MQ=255) cGAGAAAT‑GGCTGTTGTGCAACAGGCACAGCGTAATCTCTGTCTGGAAAGTTATGACCGTATAGa < 1:3759986‑M2/64‑1 (MQ=255) cGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGa < 1:1251233‑M2/64‑1 (MQ=255) cGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGa < 1:3732271‑M2/64‑1 (MQ=255) cGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGa < 1:1629243‑M2/64‑1 (MQ=255) cGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGa < 1:2386409‑M2/64‑1 (MQ=255) | ACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTGTCGGAGAAAT‑GGCTGTTGTGCAACAGGCACAACGTAATCTCTGTCTGGAAAGTTATGACCGTATAGA > NC_000913/486058‑486185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |